Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 3.1e-156 555.1 276 100.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 5.0e-122 441.4 276 81.5
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 4.3e-113 411.8 269 75.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.6e-112 408.7 272 77.2
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.7e-109 399.8 270 77.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 1.7e-109 399.8 270 72.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.5e-105 386.0 269 71.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.0e-103 378.6 270 71.1
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.4e-92 343.6 267 69.7
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.7e-90 336.7 276 62.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 6.6e-90 334.7 274 62.0
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 4.3e-89 332.0 281 62.3
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.3e-89 331.3 241 68.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 9.5e-89 330.9 273 63.7
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.1e-88 327.8 271 63.1
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.8e-87 326.6 273 62.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 6.8e-87 324.7 246 70.3
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.2e-86 323.9 263 61.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 3.4e-86 322.4 274 59.1
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 4.4e-86 322.0 245 63.7
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 5.8e-86 321.6 238 66.8
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 9.9e-86 320.9 241 65.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.7e-85 320.1 240 65.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 2.2e-85 319.7 245 65.7
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.2e-85 319.7 274 60.6
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 4.9e-85 318.5 245 65.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.9e-84 316.6 240 64.2
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 2.4e-84 316.2 231 65.4
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 9.2e-84 314.3 231 68.0
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 9.2e-84 314.3 273 57.9
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 9.2e-84 314.3 249 63.5
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.1e-83 313.2 237 66.7
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 2.7e-83 312.8 275 58.5
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 2.7e-83 312.8 237 65.8
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 3.5e-83 312.4 239 65.3
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.5e-83 312.4 265 59.6
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 4.6e-83 312.0 180 87.8
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.0e-83 311.6 277 58.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.0e-82 310.8 267 57.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 1.3e-82 310.5 235 63.8
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 1.7e-82 310.1 230 65.7
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 5.1e-82 308.5 276 56.9
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.9e-81 306.6 265 58.5
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 9.6e-81 304.3 269 58.4
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.6e-80 303.5 236 63.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 2.1e-80 303.1 244 63.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.1e-80 303.1 272 58.8
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 2.8e-80 302.8 272 57.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 6.2e-80 301.6 237 62.9
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 8.1e-80 301.2 271 56.5
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.1e-80 301.2 272 57.0
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 8.1e-80 301.2 236 62.7
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.4e-79 300.4 265 58.5
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.8e-79 300.1 271 56.5
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.4e-79 299.7 236 62.7
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 3.1e-79 299.3 248 60.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.2e-79 298.5 274 56.6
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.2e-79 298.5 234 63.7
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 6.9e-79 298.1 281 56.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.2e-78 297.4 226 64.2
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.5e-78 297.0 236 61.9
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.6e-78 296.2 274 56.2
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 5.8e-78 295.0 272 57.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 5.8e-78 295.0 236 62.3
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.7e-77 293.5 233 61.4
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.2e-77 293.1 251 58.2
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 8.4e-77 291.2 277 54.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.1e-76 290.8 277 56.7
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 4.2e-76 288.9 233 60.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 4.2e-76 288.9 275 55.3
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 9.3e-76 287.7 229 61.6
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.2e-75 287.3 233 60.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.2e-75 287.3 233 60.9
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 1.6e-75 287.0 233 59.7
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.1e-75 286.6 233 59.7
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 2.1e-75 286.6 233 59.7
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 3.5e-75 285.8 245 60.0
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 7.8e-75 284.6 233 60.1
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 1.0e-74 284.3 271 56.1
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.7e-74 283.5 275 53.8
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.9e-74 282.3 242 59.1
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 8.7e-74 281.2 233 58.4
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.3e-73 279.3 206 66.5
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.1e-72 274.6 206 65.0
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 3.1e-71 272.7 224 62.1
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.5e-70 270.4 231 60.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 5.8e-70 268.5 240 58.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 7.6e-70 268.1 198 65.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 8.4e-69 264.6 199 66.3
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 3.5e-67 259.2 187 69.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.3e-65 252.7 246 54.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 4.3e-65 252.3 253 52.6
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.8e-64 249.6 240 55.0
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.8e-64 249.6 239 53.1
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 9.9e-62 241.1 222 56.3
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 1.3e-61 240.7 245 51.8
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-60 236.1 186 62.4
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-58 230.7 181 63.0
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.5e-57 227.3 218 53.2
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 4.3e-57 225.7 219 53.9
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.8e-56 222.2 237 51.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 7.4e-49 198.4 160 61.9
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.9e-47 191.8 198 53.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.4e-44 181.4 225 48.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.3e-42 176.8 124 67.7
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 6.3e-40 168.7 122 66.4
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.7e-33 144.8 150 48.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 9.7e-33 144.8 218 36.7
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.0e-30 137.1 125 57.6
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 5.9e-30 135.6 117 55.6
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.3e-29 134.4 116 59.5
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.4e-28 128.3 128 50.0
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-26 124.4 260 35.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.2e-24 115.2 112 53.6
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.2e-24 115.2 103 56.3
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.2e-22 111.3 74 68.9
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.0e-21 108.2 86 61.6
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-19 99.0 96 52.1
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.0e-19 98.6 121 48.8
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.0e-19 98.6 71 67.6
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.3e-17 93.2 62 71.0
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.3e-16 91.3 83 50.6
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 6.3e-16 89.0 91 48.4
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-15 88.2 99 49.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.4e-15 87.8 95 48.4
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-13 80.5 87 48.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.6e-11 74.3 66 50.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 1.0e-10 71.6 83 43.4
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 2.8e-08 63.5 211 27.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-07 60.1 88 37.5
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 3.1e-07 60.1 47 53.2
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 4.1e-07 59.7 79 43.0
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.1e-07 59.7 70 44.3
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 5.4e-07 59.3 79 43.0
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.6e-06 57.8 45 55.6
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 3.5e-06 56.6 31 77.4
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.7e-06 55.5 48 58.3


User provided reference genes

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