Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G166000 Phaseolus vulgaris HOM05D007074 ORTHO05D008542 2.1e-135 485.7 254 100.0
Glyma.15G092900 Glycine max HOM05D007074 ORTHO05D008542 1.4e-91 340.1 262 77.5
Glyma.13G219300 Glycine max HOM05D007074 ORTHO05D008542 1.0e-84 317.4 262 73.3
VMungo0540G2047 Vigna mungo HOM05D007074 ORTHO05D008542 1.2e-66 257.3 197 77.2
Lj6g0018330 Lotus japonicus HOM05D007074 ORTHO05D008542 4.9e-55 218.8 259 56.4
Medtr2g019160 Medicago truncatula HOM05D007074 ORTHO05D008542 4.9e-55 218.8 274 57.3
TPR.G26250 Trifolium pratense HOM05D007074 ORTHO05D008542 1.8e-54 216.9 273 52.7
Lalb_Chr20g0117821 Lupinus albus HOM05D007074 ORTHO05D008542 5.9e-53 211.8 296 52.7
Psat1g191080 Pisum sativum HOM05D007074 ORTHO05D008542 3.3e-51 206.1 273 53.8
Psat1g191160 Pisum sativum HOM05D007074 ORTHO05D008542 4.3e-51 205.7 273 53.8
QL05p057294 Quercus lobata HOM05D007074 ORTHO05D008542 2.1e-37 160.2 250 46.0
Glyma.08G097500 Glycine max HOM05D007074 ORTHO05D008542 2.7e-37 159.8 260 47.3
Thecc.06G148300 Theobroma cacao HOM05D007074 ORTHO05D008542 7.3e-35 151.8 251 46.6
Ciclev10017572m.g Citrus clementina HOM05D007074 ORTHO05D008542 6.8e-33 145.2 270 42.6
Lalb_Chr18g0055351 Lupinus albus HOM05D007074 ORTHO05D008542 1.2e-32 144.4 258 45.3
Prupe.4G082900 Prunus persica HOM05D007074 ORTHO05D008542 5.8e-32 142.1 247 43.3
arahy.Tifrunner.gnm1.ann1.0G1Q0G Arachis hypogaea HOM05D007074 ORTHO05D008542 9.9e-32 141.4 286 40.9
MD05G1281700 Malus domestica HOM05D007074 ORTHO05D008542 3.8e-31 139.4 254 42.9
Ca_00533_v3 Cicer arietinum L. HOM05D007074 ORTHO05D008542 9.2e-30 134.8 223 47.5
COL.COLO4_31042 Corchorus olitorius HOM05D007074 ORTHO05D008542 1.2e-29 134.4 238 43.7
MD10G1260500 Malus domestica HOM05D007074 ORTHO05D008542 1.2e-29 134.4 255 41.2
Hma1.2p1_0020F.1_g014170 Hydrangea macrophylla HOM05D007074 ORTHO05D008542 6.0e-29 132.1 231 45.0
arahy.Tifrunner.gnm1.ann1.4BL86F Arachis hypogaea HOM05D007074 ORTHO05D008542 1.5e-27 127.5 202 45.0
Manes.15G123200 Manihot esculenta HOM05D007074 ORTHO05D008542 2.5e-27 126.7 249 38.6
Manes.17G071900 Manihot esculenta HOM05D007074 ORTHO05D008542 4.3e-27 125.9 252 39.7
Duzib235G1065 Durio zibethinus HOM05D007074 ORTHO05D008542 1.2e-26 124.4 244 43.0
CiPaw.10G090600 Carya illinoinensis HOM05D007074 ORTHO05D008542 2.8e-26 123.2 237 38.8
TWI53G1156 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 6.9e-25 118.6 254 37.8
Gorai.009G154100 Gossypium raimondii HOM05D007074 ORTHO05D008542 2.0e-24 117.1 252 39.3
Gohir.D05G150000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 2.6e-24 116.7 252 39.3
Gohir.A05G147500 Gossypium hirsutum HOM05D007074 ORTHO05D008542 5.8e-24 115.5 253 39.1
CiPaw.09G122000 Carya illinoinensis HOM05D007074 ORTHO05D008542 8.4e-23 111.7 242 37.6
A09p36350 Brassica napus HOM05D007074 ORTHO05D008542 3.2e-22 109.8 252 36.5
BraA09t39159Z Brassica rapa HOM05D007074 ORTHO05D008542 3.2e-22 109.8 252 36.5
THA.LOC104814307 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 9.3e-22 108.2 264 35.2
TWI73G0984 Tripterygium wilfordii HOM05D007074 ORTHO05D008542 2.1e-21 107.1 252 35.7
FAN16G0984 Fragaria x ananassa HOM05D007074 ORTHO05D008542 2.7e-21 106.7 252 38.5
Thhalv10008361m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 3.5e-21 106.3 270 35.6
FAN25G3808 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.3e-20 104.4 254 37.4
BcaB07g32617 Brassica carinata HOM05D007074 ORTHO05D008542 3.0e-20 103.2 273 34.8
Atru.chr10.1177 Acer truncatum HOM05D007074 ORTHO05D008542 5.1e-20 102.4 233 36.1
Cfa000927 Carpinus fangiana HOM05D007074 ORTHO05D008542 6.6e-20 102.1 243 39.1
BcaC05g27044 Brassica carinata HOM05D007074 ORTHO05D008542 1.1e-19 101.3 270 35.9
C05p29030 Brassica napus HOM05D007074 ORTHO05D008542 1.1e-19 101.3 270 35.9
BolC5t31631H Brassica oleracea HOM05D007074 ORTHO05D008542 1.1e-19 101.3 270 35.9
FAN21G0051 Fragaria x ananassa HOM05D007074 ORTHO05D008542 1.1e-19 101.3 251 35.1
Dinv05217 Davidia involucrata HOM05D007074 ORTHO05D008542 4.3e-19 99.4 135 47.4
Sp1g26010 Schrenkiella parvula HOM05D007074 ORTHO05D008542 4.3e-19 99.4 268 33.6
Carub.0001s2842 Capsella rubella HOM05D007074 ORTHO05D008542 1.3e-18 97.8 275 34.9
MELO3C002739.2 Cucumis melo HOM05D007074 ORTHO05D008542 1.3e-18 97.8 236 37.7
Gohir.A06G138601 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.6e-18 97.4 228 36.4
Gohir.D06G143401 Gossypium hirsutum HOM05D007074 ORTHO05D008542 1.6e-18 97.4 228 36.0
Gorai.010G167100 Gossypium raimondii HOM05D007074 ORTHO05D008542 2.8e-18 96.7 233 36.5
SGA_v2.0_scaffold1478G53958 Striga asiatica HOM05D007074 ORTHO05D008542 4.8e-18 95.9 242 33.1
SGA_v2.0_scaffold1G00191 Striga asiatica HOM05D007074 ORTHO05D008542 4.8e-18 95.9 242 33.1
FvH4_3g05300 Fragaria vesca HOM05D007074 ORTHO05D008542 6.2e-18 95.5 247 34.4
CARHR029240 Cardamine hirsuta HOM05D007074 ORTHO05D008542 8.1e-18 95.1 257 35.0
Oeu034132.1 Olea europaea HOM05D007074 ORTHO05D008542 2.4e-17 93.6 256 34.4
A07p10060 Brassica napus HOM05D007074 ORTHO05D008542 6.9e-17 92.0 261 36.4
BraA07t28799Z Brassica rapa HOM05D007074 ORTHO05D008542 6.9e-17 92.0 261 36.4
CsaV3_1G032390 Cucumis sativus L. HOM05D007074 ORTHO05D008542 6.9e-17 92.0 234 36.3
A04p26510 Brassica napus HOM05D007074 ORTHO05D008542 9.0e-17 91.7 250 31.6
C04p63930 Brassica napus HOM05D007074 ORTHO05D008542 9.0e-17 91.7 250 31.6
Nn3g20397 Nelumbo nucifera HOM05D007074 ORTHO05D008542 9.0e-17 91.7 263 35.7
AL1G44090 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.2e-16 91.3 272 34.9
AL700U10010 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.2e-16 91.3 272 34.9
BraA04t18155Z Brassica rapa HOM05D007074 ORTHO05D008542 1.2e-16 91.3 250 31.6
THA.LOC104820655 Tarenaya hassleriana HOM05D007074 ORTHO05D008542 1.2e-16 91.3 270 30.4
BcaB03g13841 Brassica carinata HOM05D007074 ORTHO05D008542 3.4e-16 89.7 261 34.9
PGSC0003DMG400021166 Solanum tuberosum HOM05D007074 ORTHO05D008542 1.7e-15 87.4 236 33.1
Eucgr.E02421 Eucalyptus grandis HOM05D007074 ORTHO05D008542 2.2e-15 87.0 252 35.7
Nn4g26598 Nelumbo nucifera HOM05D007074 ORTHO05D008542 2.9e-15 86.7 258 35.7
BolC4t27860H Brassica oleracea HOM05D007074 ORTHO05D008542 3.8e-15 86.3 256 32.4
ClCG03G006810 Citrullus lanatus HOM05D007074 ORTHO05D008542 8.4e-15 85.1 206 36.9
PGR031G2887 Punica granatum HOM05D007074 ORTHO05D008542 1.4e-14 84.3 234 33.8
Rhsim13G0115100 Rhododendron simsii HOM05D007074 ORTHO05D008542 1.9e-14 84.0 87 54.0
BcaB06g28786 Brassica carinata HOM05D007074 ORTHO05D008542 4.2e-14 82.8 243 33.7
Migut.M00897 Erythranthe guttata HOM05D007074 ORTHO05D008542 5.4e-14 82.4 251 32.3
AT1G30190 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 7.1e-14 82.0 276 31.9
AT2G34610 Arabidopsis thaliana HOM05D007074 ORTHO05D008542 7.1e-14 82.0 275 29.8
MBI02_g24299_MAGBIO Magnolia biondii HOM05D007074 ORTHO05D008542 7.1e-14 82.0 277 32.1
Thhalv10017803m.g Eutrema salsugineum HOM05D007074 ORTHO05D008542 1.6e-13 80.9 286 31.1
Sed0013579 Sechium edule HOM05D007074 ORTHO05D008542 2.7e-13 80.1 246 34.6
Gohir.A10G042100 Gossypium hirsutum HOM05D007074 ORTHO05D008542 4.6e-13 79.3 253 33.6
A05p11040 Brassica napus HOM05D007074 ORTHO05D008542 1.0e-12 78.2 268 31.7
AL270U10020 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 1.3e-12 77.8 272 30.1
BraA05t20049Z Brassica rapa HOM05D007074 ORTHO05D008542 1.8e-12 77.4 268 32.1
AL4G30590 Arabidopsis lyrata HOM05D007074 ORTHO05D008542 2.3e-12 77.0 272 30.1
Aa31LG10G6790 Aethionema arabicum HOM05D007074 ORTHO05D008542 5.1e-12 75.9 265 32.8
Carub.0004s1629 Capsella rubella HOM05D007074 ORTHO05D008542 5.1e-12 75.9 289 30.1
Gohir.D10G043000 Gossypium hirsutum HOM05D007074 ORTHO05D008542 6.7e-12 75.5 254 33.5
Gorai.011G045600 Gossypium raimondii HOM05D007074 ORTHO05D008542 8.7e-12 75.1 254 33.5
Sp4g16880 Schrenkiella parvula HOM05D007074 ORTHO05D008542 1.9e-11 73.9 256 30.9
BcaB02g09522 Brassica carinata HOM05D007074 ORTHO05D008542 9.6e-11 71.6 242 33.1
CANSAT35G1578 Cannabis sativa HOM05D007074 ORTHO05D008542 9.6e-11 71.6 68 58.8
Potri.004G065300 Populus trichocarpa HOM05D007074 ORTHO05D008542 9.6e-11 71.6 255 31.4
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 6.2e-10 68.9 236 30.9
CsaV3_1G032290 Cucumis sativus L. HOM05D035155 ORTHO05D008542 1.8e-09 67.4 239 30.1
C04p14170 Brassica napus HOM05D007074 ORTHO05D008542 2.4e-09 67.0 265 31.3
BolC4t23006H Brassica oleracea HOM05D007074 ORTHO05D008542 2.4e-09 67.0 265 31.3
CARHR128710 Cardamine hirsuta HOM05D007074 ORTHO05D008542 2.4e-09 67.0 271 26.6
DCAR_003900 Daucus carota HOM05D007074 ORTHO05D008542 3.1e-09 66.6 226 32.3
BcaC02g11538 Brassica carinata HOM05D007074 ORTHO05D008542 6.9e-09 65.5 265 31.3
Aa31LG6G5540 Aethionema arabicum HOM05D007074 ORTHO05D008542 4.5e-08 62.8 332 25.0
Potri.011G083600 Populus trichocarpa HOM05D007074 ORTHO05D008542 9.9e-08 61.6 248 28.2


User provided reference genes

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