Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 1.8e-287 991.9 510 100.0
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 2.5e-260 901.7 510 92.5
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 1.1e-236 823.2 512 83.8
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 3.3e-212 741.9 511 76.5
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 8.5e-208 727.2 511 76.5
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 5.7e-196 688.0 466 77.5
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 7.4e-196 687.6 515 72.6
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 2.1e-190 669.5 515 72.2
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 2.1e-174 616.3 523 65.8
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 2.6e-172 609.4 533 64.5
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 1.7e-155 553.5 501 60.3
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.6e-153 547.0 486 61.7
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 2.7e-153 546.2 506 58.7
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 2.3e-152 543.1 502 60.2
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 3.0e-152 542.7 524 56.7
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 1.5e-151 540.4 513 57.5
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 4.3e-151 538.9 450 64.9
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 6.8e-149 531.6 489 58.9
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.3e-144 517.3 515 55.3
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 2.3e-144 516.5 519 56.1
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 5.0e-144 515.4 511 56.2
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 1.1e-143 514.2 509 56.8
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.5e-143 513.8 510 55.9
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.9e-143 513.5 408 66.2
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 7.3e-143 511.5 500 54.4
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 7.3e-143 511.5 449 61.0
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 5.2e-141 505.4 501 56.7
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 5.2e-141 505.4 444 60.6
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 5.8e-140 501.9 507 55.6
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.3e-139 500.7 507 55.6
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 1.9e-138 496.9 461 59.7
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 4.1e-138 495.7 426 62.4
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 7.1e-138 495.0 450 60.0
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 1.2e-137 494.2 418 62.7
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 4.6e-137 492.3 433 61.0
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 6.0e-137 491.9 498 55.8
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 1.7e-136 490.3 446 58.1
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 6.6e-136 488.4 523 53.2
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 1.2e-134 484.2 482 55.0
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 1.6e-134 483.8 441 58.3
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.1e-133 481.1 513 52.6
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 1.4e-133 480.7 430 60.7
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 1.4e-133 480.7 451 57.2
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 4.0e-133 479.2 455 59.1
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.2e-132 477.6 445 57.8
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 1.3e-131 474.2 471 55.6
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 1.4e-130 470.7 499 54.3
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 2.4e-130 469.9 322 77.0
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 3.2e-130 469.5 519 52.2
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 3.5e-129 466.1 479 54.5
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.5e-129 466.1 461 56.8
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 1.5e-127 460.7 449 54.8
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 4.3e-127 459.1 447 58.2
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 9.6e-127 458.0 509 52.5
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 1.4e-125 454.1 498 52.6
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.9e-123 446.4 513 50.7
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 1.9e-122 443.7 451 55.4
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 7.1e-122 441.8 416 57.5
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.7e-121 439.9 513 50.3
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 1.3e-120 437.6 369 62.6
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 1.1e-119 434.5 421 55.1
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 3.3e-119 433.0 452 54.4
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 1.6e-118 430.6 507 50.5
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 3.6e-118 429.5 449 52.3
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 6.2e-118 428.7 458 52.6
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.4e-117 426.8 388 57.0
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 1.2e-116 424.5 441 54.9
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 2.6e-116 423.3 448 54.0
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 7.6e-116 421.8 394 58.6
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 2.9e-115 419.9 460 52.4
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 4.9e-115 419.1 460 52.2
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 6.4e-115 418.7 432 55.8
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 8.7e-112 408.3 452 50.2
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 8.1e-110 401.7 445 52.6
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 2.4e-109 400.2 445 52.4
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 9.0e-109 398.3 445 52.1
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 1.7e-107 394.0 445 51.7
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 1.7e-107 394.0 304 67.4
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 1.4e-106 391.0 447 50.6
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 1.4e-106 391.0 454 50.2
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 1.4e-106 391.0 319 68.7
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 1.5e-103 380.9 436 51.1
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 2.8e-102 376.7 560 42.0
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 5.8e-100 369.0 387 51.4
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.4e-98 364.4 361 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 6.0e-97 359.0 473 46.1
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 2.1e-89 334.0 321 56.7
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 3.3e-87 326.6 299 62.2
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 9.7e-87 325.1 326 54.0
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 5.9e-84 315.8 364 48.1
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 6.7e-80 302.4 192 80.7
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 2.8e-78 297.0 376 44.7
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 1.1e-77 295.0 415 46.3
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 1.3e-70 271.6 248 56.5
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 2.0e-68 264.2 195 69.7
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 7.2e-66 255.8 269 51.7
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 6.7e-64 249.2 322 47.2
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 1.4e-61 241.5 194 65.5
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 3.8e-59 233.4 271 50.9
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 4.0e-56 223.4 166 68.7
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 1.6e-49 201.4 166 62.0
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 7.5e-47 192.6 192 52.1
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 3.7e-46 190.3 192 51.6
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 3.7e-46 190.3 274 42.3
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 1.2e-44 185.3 180 53.9
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 1.1e-42 178.7 299 40.5
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 4.4e-39 166.8 322 37.6
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 4.9e-38 163.3 106 78.3
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 2.4e-37 161.0 281 37.0
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 4.6e-36 156.8 123 61.8
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 3.0e-35 154.1 244 40.2
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 2.8e-33 147.5 138 55.1
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 4.7e-33 146.7 363 34.2
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 2.3e-32 144.4 151 53.6
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 3.4e-31 140.6 172 51.7
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.8e-31 139.8 144 51.4
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 5.1e-27 126.7 254 32.7
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 8.6e-27 125.9 185 40.5
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.9e-26 124.8 104 65.4
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 2.9e-22 110.9 71 80.3
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 2.1e-20 104.8 154 40.9
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.6e-18 96.7 64 78.1
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 1.7e-14 85.1 141 37.6
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 4.6e-12 77.0 61 60.7
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 4.6e-12 77.0 88 51.1
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 3.1e-08 64.3 66 47.0
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 7.6e-07 59.7 83 39.8
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 3.8e-06 57.4 69 43.5


User provided reference genes

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