Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 7.3e-189 663.7 324 100.0
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 9.0e-147 523.9 309 83.5
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 7.1e-144 514.2 290 85.2
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-141 506.9 318 76.4
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 1.3e-140 503.4 289 85.1
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.3e-137 493.4 281 81.1
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 4.3e-133 478.4 295 75.9
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 3.7e-132 475.3 284 79.6
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.7e-129 466.5 283 78.4
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 3.9e-126 455.3 310 72.3
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.8e-124 449.1 269 76.2
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 4.8e-124 448.4 276 77.5
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.8e-124 448.4 266 77.8
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.8e-123 446.4 269 76.2
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 1.8e-123 446.4 299 69.6
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.1e-123 445.7 303 71.3
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.2e-122 443.7 318 67.3
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 2.0e-122 443.0 269 75.1
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.6e-122 442.6 294 71.8
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.5e-122 442.2 289 71.3
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.0e-121 440.7 296 70.9
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.3e-121 440.3 291 70.8
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 2.2e-121 439.5 278 74.5
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.8e-121 438.7 274 74.5
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 3.8e-121 438.7 282 72.0
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 6.5e-121 438.0 285 73.0
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.4e-120 436.8 293 70.6
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 4.2e-120 435.3 308 68.2
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 9.4e-120 434.1 296 70.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.2e-119 433.7 262 75.2
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.2e-119 433.7 270 73.0
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 1.2e-119 433.7 298 72.1
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.2e-119 433.7 282 70.6
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.7e-119 432.6 296 67.9
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.7e-119 432.6 262 74.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 6.1e-119 431.4 269 74.3
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 8.0e-119 431.0 270 72.6
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.0e-118 430.6 311 67.2
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.0e-118 430.6 320 65.0
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.4e-118 430.3 278 73.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.4e-118 430.3 269 74.7
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 2.3e-118 429.5 266 74.4
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 6.7e-118 427.9 271 73.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 6.7e-118 427.9 300 70.3
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 8.8e-118 427.6 269 74.3
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 8.8e-118 427.6 295 69.5
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.0e-117 426.4 295 68.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 4.4e-117 425.2 262 72.9
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 9.7e-117 424.1 286 71.3
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.7e-116 423.3 305 68.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 2.2e-116 422.9 271 72.7
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 2.2e-116 422.9 311 65.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 4.8e-116 421.8 262 74.8
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.8e-115 419.9 265 72.5
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.8e-115 419.9 269 73.2
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 4.1e-115 418.7 273 71.4
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 7.0e-115 417.9 262 72.1
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 1.6e-114 416.8 271 71.6
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.5e-114 415.2 269 71.7
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 7.7e-114 414.5 273 69.6
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.7e-113 413.3 286 67.5
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.9e-113 412.5 272 72.1
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 8.5e-113 411.0 276 71.0
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.5e-112 409.5 262 72.9
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 3.2e-112 409.1 299 64.5
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 4.2e-112 408.7 306 65.7
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 5.5e-112 408.3 257 70.4
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.6e-111 405.6 257 71.2
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 6.1e-111 404.8 261 74.3
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.0e-110 404.1 287 68.3
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.0e-110 404.1 312 66.7
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-110 403.3 300 63.0
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 2.3e-110 402.9 326 62.0
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.2e-109 400.6 271 71.6
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 1.5e-109 400.2 257 72.4
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.5e-109 400.2 267 70.0
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.6e-109 399.4 292 64.4
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 3.4e-109 399.1 269 67.7
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.4e-109 398.7 286 67.5
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 4.8e-108 395.2 328 61.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.8e-108 395.2 269 69.1
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 4.8e-108 395.2 295 64.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 6.3e-108 394.8 271 67.2
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.4e-107 393.7 262 68.7
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 1.8e-107 393.3 265 69.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.8e-107 393.3 276 67.4
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 3.1e-107 392.5 305 61.3
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.2e-106 390.6 262 67.6
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.0e-106 389.8 271 66.1
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 3.5e-106 389.0 306 61.4
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 5.9e-106 388.3 280 66.4
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 3.8e-105 385.6 254 73.6
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 3.2e-104 382.5 288 62.2
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 9.4e-104 380.9 270 66.7
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.2e-103 380.6 295 61.4
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 1.2e-103 380.6 269 67.3
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 6.8e-102 374.8 258 67.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 3.4e-101 372.5 225 76.0
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 3.4e-101 372.5 324 59.6
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.8e-100 369.4 265 65.7
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-99 367.5 262 67.2
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 4.1e-99 365.5 276 63.0
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.2e-98 364.0 337 57.0
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.0e-98 363.2 226 74.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.7e-98 362.8 262 66.0
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.5e-98 362.5 262 65.6
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.1e-96 357.5 270 65.2
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.6e-95 352.4 269 63.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.0e-94 350.9 271 60.9
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 3.0e-94 349.4 274 59.1
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 6.8e-94 348.2 267 62.9
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 8.9e-94 347.8 289 59.2
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.4e-91 339.7 327 56.3
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.2e-90 337.4 311 56.3
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.8e-90 334.7 325 53.5
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.0e-89 334.3 325 53.5
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.9e-89 332.4 280 59.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.5e-88 330.5 271 59.4
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.5e-88 330.5 270 54.4
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.5e-88 329.7 283 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 3.3e-88 329.3 271 56.5
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 5.2e-86 322.0 274 59.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 8.3e-84 314.7 309 53.1
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 4.1e-83 312.4 309 52.8
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.0e-82 310.1 249 59.8
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.7e-81 307.0 342 48.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 3.6e-79 299.3 272 54.4
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.0e-77 293.5 182 74.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 4.9e-76 288.9 260 52.3
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 1.9e-75 287.0 259 50.6
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 2.4e-75 286.6 236 59.7
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-74 284.3 266 54.5
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.7e-74 283.1 266 54.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.1e-70 269.6 267 52.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.4e-67 260.8 318 44.7
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 3.2e-67 259.6 269 49.8
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 6.6e-65 251.9 267 49.1
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 1.2e-63 247.7 157 72.6
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 4.0e-62 242.7 327 41.6
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.6e-61 240.0 185 65.9
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.4e-61 239.6 185 65.4
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 9.9e-61 238.0 200 59.0
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 1.7e-60 237.3 484 33.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 2.2e-60 236.9 150 70.7
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 2.4e-59 233.4 157 67.5
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 2.4e-59 233.4 185 60.0
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.2e-59 233.0 150 70.7
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.4e-59 232.3 188 58.5
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.7e-58 229.9 150 70.0
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.5e-58 229.6 157 66.2
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 3.9e-57 226.1 170 64.7
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 9.6e-56 221.5 231 50.6
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.8e-54 217.2 244 43.0
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 4.9e-52 209.1 269 40.9
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 2.1e-50 203.8 150 62.7
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 4.8e-47 192.6 117 71.8
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 9.0e-46 188.3 225 42.2
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 7.1e-43 178.7 136 62.5
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 3.9e-41 172.9 109 70.6
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.1e-41 172.6 105 74.3
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.5e-40 171.0 150 56.7
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 9.6e-40 168.3 108 69.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 2.1e-39 167.2 106 69.8
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.9e-36 156.0 127 55.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.5e-36 155.6 104 68.3
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-33 147.5 186 45.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 3.9e-33 146.4 82 81.7
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 2.0e-29 134.0 138 50.7
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.2e-27 126.3 96 57.3
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.2e-27 126.3 96 57.3
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.3e-25 120.6 90 60.0
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.9e-21 105.9 77 61.0
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.5e-19 100.5 72 58.3
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.2e-18 98.2 60 66.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 8.8e-17 92.0 60 71.7
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.1e-14 82.0 50 74.0
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 6.5e-12 75.9 51 72.5
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 9.4e-11 72.0 55 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 6.1e-10 69.3 53 60.4
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 4.4e-08 63.2 37 78.4


User provided reference genes

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