Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G160600 Phaseolus vulgaris HOM05D007701 ORTHO05D006440 2.7e-71 271.9 144 100.0
Glyma.15G098700 Glycine max HOM05D007701 ORTHO05D006440 3.4e-45 185.3 146 76.0
Glyma.13G214500 Glycine max HOM05D007701 ORTHO05D006440 2.9e-44 182.2 150 73.3
Ca_00580_v3 Cicer arietinum L. HOM05D007701 ORTHO05D006440 5.0e-41 171.4 136 72.8
Lalb_Chr15g0087071 Lupinus albus HOM05D007701 ORTHO05D006440 1.8e-38 162.9 132 72.7
Medtr2g020370 Medicago truncatula HOM05D007701 ORTHO05D006440 1.5e-37 159.8 142 66.2
Lalb_Chr20g0118191 Lupinus albus HOM05D007701 ORTHO05D006440 2.9e-36 155.6 137 66.4
LjContig00389g0004887 Lotus japonicus HOM05D007701 ORTHO05D006440 2.1e-34 149.4 130 67.7
TPR.G1519 Trifolium pratense HOM05D007701 ORTHO05D006440 3.0e-33 145.6 139 61.2
Cfa015502 Carpinus fangiana HOM05D007701 ORTHO05D006440 4.0e-30 135.2 128 62.5
Haze_01050 Corylus avellana HOM05D007701 ORTHO05D006440 7.6e-29 131.0 124 62.1
Psat1g187000 Pisum sativum HOM05D007701 ORTHO05D006440 4.9e-28 128.3 131 62.6
Duzib151G0788 Durio zibethinus HOM05D007701 ORTHO05D006440 2.3e-25 119.4 122 61.5
Thecc.04G276200 Theobroma cacao HOM05D007701 ORTHO05D006440 6.9e-22 107.8 131 55.7
CiPaw.01G153900 Carya illinoinensis HOM05D007701 ORTHO05D006440 1.5e-21 106.7 128 55.5
QL12p038321 Quercus lobata HOM05D007701 ORTHO05D006440 3.4e-21 105.5 136 52.9
Duzib212G0358 Durio zibethinus HOM05D007701 ORTHO05D006440 2.2e-20 102.8 111 57.7
COL.COLO4_13938 Corchorus olitorius HOM05D007701 ORTHO05D006440 9.3e-19 97.4 102 62.7
Dinv38332 Davidia involucrata HOM05D007701 ORTHO05D006440 9.3e-19 97.4 130 46.9
Dinv44434 Davidia involucrata HOM05D007701 ORTHO05D006440 2.7e-18 95.9 102 58.8
CiPaw.02G087100 Carya illinoinensis HOM05D007701 ORTHO05D006440 1.0e-17 94.0 137 51.1
TWI09G0131 Tripterygium wilfordii HOM05D007701 ORTHO05D006440 1.3e-17 93.6 91 64.8
Potri.008G195700 Populus trichocarpa HOM05D007701 ORTHO05D006440 2.3e-17 92.8 132 48.5
Potri.010G031700 Populus trichocarpa HOM05D007701 ORTHO05D006440 3.0e-17 92.4 130 48.5
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 1.9e-16 89.7 134 47.8
Hma1.2p1_0078F.1_g040840 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 1.5e-13 80.1 103 50.5
Manes.03G190500 Manihot esculenta HOM05D007701 ORTHO05D006440 4.5e-13 78.6 138 43.5
Oeu021618.1 Olea europaea HOM05D007701 ORTHO05D006440 9.9e-13 77.4 127 44.9
THA.LOC104802728 Tarenaya hassleriana HOM05D012083 ORTHO05D006440 1.3e-12 77.0 102 47.1
Ciclev10022800m.g Citrus clementina HOM05D007701 ORTHO05D006440 6.4e-12 74.7 138 44.2
QL06p007247 Quercus lobata HOM05D007701 ORTHO05D006440 8.4e-12 74.3 121 48.8
Nitab4.5_0004150g0050 Nicotiana tabacum HOM05D007701 ORTHO05D006440 3.2e-11 72.4 83 54.2
CAN.G2895.2 Capsicum annuum HOM05D007701 ORTHO05D006440 7.1e-11 71.2 107 50.5
QL12p024168 Quercus lobata HOM05D007701 ORTHO05D006440 7.1e-11 71.2 83 53.0
Potri.014G135100 Populus trichocarpa HOM05D007701 ORTHO05D006440 1.2e-10 70.5 104 48.1
ClCG06G005430 Citrullus lanatus HOM05D007701 ORTHO05D006440 1.6e-10 70.1 91 53.8
Prupe.1G143000 Prunus persica HOM05D016333 ORTHO05D006440 1.6e-10 70.1 134 41.8
PGSC0003DMG400031864 Solanum tuberosum HOM05D007701 ORTHO05D006440 1.6e-10 70.1 133 40.6
CAN.G426.28 Capsicum annuum HOM05D007701 ORTHO05D006440 2.1e-10 69.7 107 49.5
Thhalv10015003m.g Eutrema salsugineum HOM05D012083 ORTHO05D006440 2.1e-10 69.7 84 57.1
Nitab4.5_0002093g0180 Nicotiana tabacum HOM05D000530 ORTHO05D000621 3.5e-10 68.9 113 45.1
Solyc09g074450.1 Solanum lycopersicum HOM05D007701 ORTHO05D006440 3.5e-10 68.9 103 44.7
Sopen09g029300 Solanum pennellii HOM05D007701 ORTHO05D006440 6.0e-10 68.2 81 54.3
Peaxi162Scf00041g01724 Petunia axillaris HOM05D020366 ORTHO05D006440 7.9e-10 67.8 111 45.0
Prupe.8G252700 Prunus persica HOM05D007701 ORTHO05D006440 7.9e-10 67.8 119 44.5
CANSAT25G3325 Cannabis sativa HOM05D007701 ORTHO05D006440 1.0e-09 67.4 106 46.2
RcHm_v2.0_Chr4g0420861 Rosa chinensis HOM05D016333 ORTHO05D006440 1.8e-09 66.6 127 43.3
Hma1.2p1_0209F.1_g089060 Hydrangea macrophylla HOM05D007701 ORTHO05D006440 2.3e-09 66.2 85 51.8
Potri.002G207500 Populus trichocarpa HOM05D007701 ORTHO05D006440 5.1e-09 65.1 111 46.8
BraA10t44152Z Brassica rapa HOM05D012083 ORTHO05D006440 6.7e-09 64.7 108 45.4
Migut.G00219 Erythranthe guttata HOM05D007701 ORTHO05D006440 6.7e-09 64.7 106 47.2
Nitab4.5_0000232g0150 Nicotiana tabacum HOM05D020366 ORTHO05D006440 8.7e-09 64.3 83 55.4
BcaB08g36652 Brassica carinata HOM05D012083 ORTHO05D006440 1.1e-08 63.9 69 56.5
CiPaw.07G100300 Carya illinoinensis HOM05D007701 ORTHO05D006440 1.1e-08 63.9 84 50.0
Thecc.01G290700 Theobroma cacao HOM05D007701 ORTHO05D006440 1.1e-08 63.9 131 38.9
Medtr1g088970 Medicago truncatula HOM05D007701 ORTHO05D006440 1.5e-08 63.5 78 48.7
Sabra08G0148800 Salix brachista HOM05D007701 ORTHO05D006440 1.9e-08 63.2 103 47.6
AL6G29970 Arabidopsis lyrata HOM05D012083 ORTHO05D006440 2.5e-08 62.8 86 53.5
A10p20870 Brassica napus HOM05D012083 ORTHO05D006440 2.5e-08 62.8 82 54.9
Carub.0006s1699 Capsella rubella HOM05D012083 ORTHO05D006440 2.5e-08 62.8 83 56.6
Gohir.A11G118000 Gossypium hirsutum HOM05D007701 ORTHO05D006440 2.5e-08 62.8 126 40.5
BcaC04g18652 Brassica carinata HOM05D012083 ORTHO05D006440 4.3e-08 62.0 104 45.2
BcaC04g18653 Brassica carinata HOM05D012083 ORTHO05D006440 4.3e-08 62.0 104 45.2
C09p57760 Brassica napus HOM05D012083 ORTHO05D006440 4.3e-08 62.0 104 45.2
BolC9t58646H Brassica oleracea HOM05D012083 ORTHO05D006440 4.3e-08 62.0 104 45.2
Nitab4.5_0003631g0050 Nicotiana tabacum HOM05D020366 ORTHO05D006440 5.6e-08 61.6 84 53.6
AT5G18690 Arabidopsis thaliana HOM05D012083 ORTHO05D006440 7.4e-08 61.2 70 58.6
Manes.05G068100 Manihot esculenta HOM05D007701 ORTHO05D006440 1.3e-07 60.5 108 40.7
FvH4_4g17060 Fragaria vesca HOM05D016333 ORTHO05D006440 1.6e-07 60.1 104 45.2
FAN12G2470 Fragaria x ananassa HOM05D016333 ORTHO05D006440 1.6e-07 60.1 104 45.2
Sed0020497 Sechium edule HOM05D007701 ORTHO05D006440 1.6e-07 60.1 95 45.3
Sc19g0004910 Simmondsia chinensis HOM05D007701 ORTHO05D006440 1.6e-07 60.1 107 42.1
Sopen11g019180 Solanum pennellii HOM05D000047 ORTHO05D000044 2.1e-07 59.7 102 46.1
FAN07G1026 Fragaria x ananassa HOM05D016333 ORTHO05D006440 2.8e-07 59.3 101 46.5
FAN17G0507 Fragaria x ananassa HOM05D016333 ORTHO05D006440 3.7e-07 58.9 116 41.4
Gohir.D10G166000 Gossypium hirsutum HOM05D033993 ORTHO05D006440 4.8e-07 58.5 59 52.5
CARHR194310 Cardamine hirsuta HOM05D012083 ORTHO05D006440 6.2e-07 58.2 81 50.6
FAN12G2150 Fragaria x ananassa HOM05D016333 ORTHO05D006440 8.1e-07 57.8 101 45.5
Lalb_Chr02g0143101 Lupinus albus HOM05D007701 ORTHO05D006440 8.1e-07 57.8 90 45.6
Solyc04g074167.1 Solanum lycopersicum HOM05D020366 ORTHO05D006440 8.1e-07 57.8 83 53.0
Sopen00g012820 Solanum pennellii HOM05D020366 ORTHO05D006440 8.1e-07 57.8 83 53.0
Gohir.A10G101770 Gossypium hirsutum HOM05D033993 ORTHO05D006440 1.1e-06 57.4 59 52.5
Gorai.011G185400 Gossypium raimondii HOM05D033993 ORTHO05D006440 1.4e-06 57.0 59 52.5
MELO3C021367.2 Cucumis melo HOM05D007701 ORTHO05D006440 1.8e-06 56.6 97 48.5
CsaV3_6G005680 Cucumis sativus L. HOM05D007701 ORTHO05D006440 1.8e-06 56.6 97 48.5
Carub.0004s3065 Capsella rubella HOM05D011411 ORTHO05D006440 2.4e-06 56.2 112 40.2
CDE05G2550 Ceratophyllum demersum HOM05D007701 ORTHO05D006440 3.1e-06 55.8 66 51.5
Gohir.D11G122900 Gossypium hirsutum HOM05D007701 ORTHO05D006440 3.1e-06 55.8 126 38.1
Gorai.007G131800 Gossypium raimondii HOM05D007701 ORTHO05D006440 3.1e-06 55.8 126 38.1
CARHR143320 Cardamine hirsuta HOM05D011411 ORTHO05D006440 6.9e-06 54.7 112 42.0
Sp6g25650 Schrenkiella parvula HOM05D012083 ORTHO05D006440 9.0e-06 54.3 86 48.8


User provided reference genes

Program Settings