Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 3.1e-43 177.9 84 100.0
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 2.6e-29 131.7 84 76.2
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 2.7e-26 121.7 84 71.4
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.7e-26 121.7 73 82.2
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 8.6e-25 116.7 78 74.4
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 6.2e-23 110.5 78 67.9
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 1.8e-22 109.0 83 65.1
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 2.6e-21 105.1 78 62.8
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 3.4e-21 104.8 78 61.5
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 3.7e-20 101.3 77 64.9
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 3.5e-18 94.7 64 71.9
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 4.6e-18 94.4 55 76.4
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 7.8e-18 93.6 87 54.0
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 6.6e-17 90.5 58 65.5
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 6.6e-17 90.5 61 67.2
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.9e-16 89.0 76 56.6
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 2.5e-16 88.6 73 50.7
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 2.5e-16 88.6 71 59.2
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.3e-16 87.8 67 61.2
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 5.6e-16 87.4 70 55.7
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 5.6e-16 87.4 84 51.2
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 7.3e-16 87.0 61 63.9
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 7.3e-16 87.0 72 58.3
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 9.5e-16 86.7 76 55.3
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 9.5e-16 86.7 60 63.3
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 9.5e-16 86.7 57 63.2
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 1.2e-15 86.3 62 58.1
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 1.6e-15 85.9 74 55.4
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 1.6e-15 85.9 72 58.3
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 2.1e-15 85.5 74 54.1
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 2.1e-15 85.5 69 56.5
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 2.1e-15 85.5 71 59.2
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 2.8e-15 85.1 66 59.1
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 2.8e-15 85.1 66 59.1
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 2.8e-15 85.1 65 61.5
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 3.6e-15 84.7 84 50.0
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 4.7e-15 84.3 65 60.0
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 8.1e-15 83.6 66 59.1
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 1.1e-14 83.2 66 54.5
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 1.1e-14 83.2 56 62.5
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.8e-14 82.4 58 63.8
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.4e-14 82.0 58 62.1
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.4e-14 82.0 58 62.1
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 2.4e-14 82.0 78 50.0
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 2.4e-14 82.0 59 57.6
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 3.1e-14 81.6 58 62.1
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 3.1e-14 81.6 58 62.1
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 3.1e-14 81.6 61 59.0
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 4.0e-14 81.3 77 51.9
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 4.0e-14 81.3 66 56.1
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 5.2e-14 80.9 72 52.8
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 5.2e-14 80.9 78 50.0
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 8.9e-14 80.1 62 59.7
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 8.9e-14 80.1 64 54.7
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 1.2e-13 79.7 76 50.0
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 2.0e-13 79.0 61 60.7
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 2.6e-13 78.6 59 62.7
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 2.6e-13 78.6 79 46.8
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 2.6e-13 78.6 59 61.0
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 3.4e-13 78.2 69 53.6
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 4.4e-13 77.8 80 45.0
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 5.8e-13 77.4 69 53.6
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 9.9e-13 76.6 59 55.9
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 1.3e-12 76.3 54 59.3
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 1.7e-12 75.9 88 47.7
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 2.2e-12 75.5 64 60.9
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 4.9e-12 74.3 52 65.4
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 8.4e-12 73.6 77 53.2
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 8.4e-12 73.6 67 49.3
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 8.4e-12 73.6 67 49.3
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 1.1e-11 73.2 53 60.4
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 1.9e-11 72.4 62 48.4
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 3.2e-11 71.6 52 53.8
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 9.2e-11 70.1 59 50.8
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 2.1e-10 68.9 54 57.4
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 2.7e-10 68.6 46 63.0
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 3.5e-10 68.2 55 60.0
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 4.6e-10 67.8 44 65.9
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 4.6e-10 67.8 44 65.9
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 4.6e-10 67.8 44 65.9
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 6.0e-10 67.4 54 51.9
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 7.8e-10 67.0 61 45.9
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 1.0e-09 66.6 45 64.4
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 1.0e-09 66.6 67 44.8
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 1.7e-09 65.9 46 65.2
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 3.0e-09 65.1 52 55.8
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 6.6e-09 63.9 41 61.0
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 1.1e-08 63.2 58 50.0
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.9e-08 62.4 41 58.5
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 4.3e-08 61.2 63 50.8
Medtr2g020890 Medicago truncatula HOM05D007586 ORTHO05D009554 2.1e-07 58.9 78 48.7
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 2.8e-07 58.5 46 54.3
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 1.4e-06 56.2 72 43.1
Medtr2g020905 Medicago truncatula HOM05D007586 ORTHO05D009554 6.9e-06 53.9 50 60.0


User provided reference genes

Program Settings