Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 2.7e-35 151.4 73 100.0
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 4.0e-26 120.9 73 82.2
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 1.2e-25 119.4 74 78.4
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 2.6e-25 118.2 72 76.4
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 1.0e-21 106.3 63 77.8
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 9.5e-20 99.8 62 71.0
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 2.8e-19 98.2 59 74.6
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 4.7e-19 97.4 72 65.3
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 6.1e-19 97.1 72 63.9
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 3.0e-18 94.7 66 68.2
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 6.8e-18 93.6 55 74.5
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.5e-17 92.4 70 61.4
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 1.3e-16 89.4 77 55.8
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 3.7e-16 87.8 70 58.6
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 3.7e-16 87.8 61 62.3
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 4.9e-16 87.4 73 54.8
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 4.9e-16 87.4 74 56.8
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 8.3e-16 86.7 63 57.1
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 1.1e-15 86.3 59 59.3
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 1.4e-15 85.9 69 58.0
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 1.4e-15 85.9 73 53.4
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 1.8e-15 85.5 74 56.8
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 1.8e-15 85.5 69 58.0
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 2.4e-15 85.1 61 63.9
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 2.4e-15 85.1 46 82.6
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 2.4e-15 85.1 73 53.4
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 2.4e-15 85.1 77 55.8
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 4.1e-15 84.3 65 56.9
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 4.1e-15 84.3 57 59.6
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 5.4e-15 84.0 78 55.1
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 5.4e-15 84.0 64 59.4
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 9.2e-15 83.2 61 57.4
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 9.2e-15 83.2 64 59.4
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 1.2e-14 82.8 71 54.9
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 1.6e-14 82.4 73 54.8
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 2.0e-14 82.0 74 55.4
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 2.0e-14 82.0 59 57.6
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 4.6e-14 80.9 68 54.4
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 4.6e-14 80.9 68 54.4
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 5.9e-14 80.5 62 59.7
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 5.9e-14 80.5 75 49.3
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 7.8e-14 80.1 63 57.1
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 7.8e-14 80.1 63 57.1
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 7.8e-14 80.1 63 57.1
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 7.8e-14 80.1 63 57.1
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 7.8e-14 80.1 68 55.9
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 1.3e-13 79.3 68 54.4
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 1.7e-13 79.0 74 52.7
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 2.3e-13 78.6 67 52.2
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 2.3e-13 78.6 67 52.2
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 2.3e-13 78.6 67 52.2
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 2.3e-13 78.6 68 52.9
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 2.3e-13 78.6 62 56.5
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 3.9e-13 77.8 64 53.1
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 3.9e-13 77.8 75 50.7
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 5.0e-13 77.4 75 53.3
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 5.0e-13 77.4 66 56.1
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 6.6e-13 77.0 71 50.7
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 8.6e-13 76.6 61 57.4
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 1.1e-12 76.3 59 59.3
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 1.5e-12 75.9 86 45.3
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.9e-12 75.5 52 67.3
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 4.3e-12 74.3 76 48.7
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 5.6e-12 73.9 57 52.6
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 7.3e-12 73.6 68 45.6
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 7.3e-12 73.6 66 53.0
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 7.3e-12 73.6 54 55.6
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 9.5e-12 73.2 59 50.8
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 1.6e-11 72.4 54 53.7
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.8e-11 71.6 63 50.8
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 3.6e-11 71.2 66 53.0
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 1.4e-10 69.3 49 61.2
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.8e-10 68.9 54 53.7
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 1.8e-10 68.9 65 52.3
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 4.0e-10 67.8 56 51.8
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 4.0e-10 67.8 37 78.4
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 6.8e-10 67.0 66 42.4
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 8.9e-10 66.6 50 58.0
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 1.2e-09 66.2 50 58.0
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 1.5e-09 65.9 44 65.9
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 1.5e-09 65.9 44 65.9
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 1.5e-09 65.9 44 65.9
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 2.6e-09 65.1 52 55.8
Medtr2g020940 Medicago truncatula HOM05D007586 ORTHO05D009554 2.6e-09 65.1 46 63.0
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 2.6e-09 65.1 52 53.8
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 5.8e-09 63.9 51 58.8
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 4.9e-08 60.8 63 46.0
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.1e-07 59.7 57 45.6
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.1e-07 59.7 57 45.6
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 2.4e-07 58.5 67 46.3
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 4.1e-07 57.8 45 60.0
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 6.0e-06 53.9 62 41.9


User provided reference genes

Program Settings