Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 2.9e-58 228.4 118 100.0
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 8.9e-52 206.8 119 91.6
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 1.2e-51 206.5 120 90.8
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 2.0e-51 205.7 119 92.4
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 4.0e-44 181.4 116 81.9
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 2.0e-43 179.1 116 81.9
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 2.2e-42 175.6 114 79.8
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 2.4e-41 172.2 116 79.3
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 4.1e-41 171.4 118 76.3
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 2.7e-40 168.7 116 76.7
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 6.6e-39 164.1 114 77.2
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.1e-38 163.3 118 74.6
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.6e-37 159.5 111 76.6
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 3.6e-37 158.3 119 78.2
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 3.8e-34 148.3 119 72.3
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 6.0e-32 141.0 105 74.3
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 3.0e-31 138.7 119 74.8
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 2.1e-29 132.5 123 63.4
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 2.1e-29 132.5 123 63.4
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 2.8e-29 132.1 118 61.9
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 3.6e-29 131.7 125 68.0
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 5.8e-27 124.4 116 59.5
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 7.6e-27 124.0 120 61.7
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 2.9e-26 122.1 123 59.3
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 6.4e-26 120.9 113 69.9
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.1e-25 120.2 120 60.0
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 3.2e-25 118.6 118 58.5
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 7.1e-25 117.5 119 58.8
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 9.3e-25 117.1 121 58.7
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 9.3e-25 117.1 120 59.2
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 9.3e-25 117.1 116 57.8
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.6e-24 116.3 120 59.2
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.5e-24 115.2 127 56.7
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 4.6e-24 114.8 128 55.5
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 4.6e-24 114.8 128 55.5
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 1.0e-23 113.6 125 60.0
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 1.7e-23 112.8 124 58.9
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 2.3e-23 112.5 122 58.2
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 2.3e-23 112.5 127 52.8
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.9e-23 111.7 128 54.7
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 3.9e-23 111.7 122 55.7
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 5.1e-23 111.3 122 57.4
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 8.7e-23 110.5 89 65.2
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 1.1e-22 110.2 114 57.0
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 2.5e-22 109.0 107 57.0
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 3.3e-22 108.6 120 55.8
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 4.3e-22 108.2 125 56.8
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 4.3e-22 108.2 119 56.3
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 4.8e-21 104.8 119 48.7
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 4.8e-21 104.8 110 55.5
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 8.1e-21 104.0 115 52.2
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 1.1e-20 103.6 122 52.5
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 3.1e-20 102.1 115 54.8
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 5.3e-20 101.3 127 50.4
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 6.9e-20 100.9 123 55.3
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 3.4e-19 98.6 118 51.7
Glyma.17G015900 Glycine max HOM05D004695 ORTHO05D005372 5.8e-19 97.8 94 61.7
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 1.7e-18 96.3 109 54.1
arahy.Tifrunner.gnm1.ann1.P7T279 Arachis hypogaea HOM05D004695 ORTHO05D005372 1.1e-17 93.6 123 57.7
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.1e-17 93.6 130 53.8
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 1.9e-17 92.8 107 57.0
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 5.4e-17 91.3 119 50.4
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 5.4e-17 91.3 122 50.8
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 9.3e-17 90.5 97 53.6
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 9.3e-17 90.5 127 46.5
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 1.6e-16 89.7 116 50.9
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 3.5e-16 88.6 126 48.4
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 7.9e-16 87.4 96 54.2
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 7.9e-16 87.4 105 49.5
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 1.0e-15 87.0 117 47.0
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 1.8e-15 86.3 121 47.1
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 3.0e-15 85.5 109 48.6
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 8.7e-15 84.0 127 44.9
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 8.7e-15 84.0 117 48.7
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 2.5e-14 82.4 117 50.4
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 4.3e-14 81.6 107 50.5
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 5.6e-14 81.3 117 49.6
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 2.1e-13 79.3 113 48.7
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 2.1e-13 79.3 121 43.8
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 2.8e-13 79.0 108 53.7
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 3.7e-13 78.6 108 48.1
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 3.7e-13 78.6 104 50.0
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 8.1e-13 77.4 120 45.8
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 1.4e-12 76.6 92 52.2
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 1.8e-12 76.3 73 58.9
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 3.1e-12 75.5 95 51.6
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 9.0e-12 73.9 108 50.0
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.2e-11 73.6 121 44.6
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 1.2e-11 73.6 122 40.2
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 2.0e-11 72.8 104 45.2
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 2.6e-11 72.4 87 50.6
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 2.6e-11 72.4 108 50.0
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 3.4e-11 72.0 94 50.0
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 3.4e-11 72.0 125 44.0
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 4.5e-11 71.6 104 45.2
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 4.5e-11 71.6 93 51.6
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 4.5e-11 71.6 116 43.1
Cpa.g.sc147.16 Carica papaya HOM05D004695 ORTHO05D005372 5.8e-11 71.2 74 52.7
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 9.9e-11 70.5 108 46.3
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 1.3e-10 70.1 79 54.4
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 1.7e-10 69.7 105 45.7
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 1.7e-10 69.7 116 42.2
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 2.2e-10 69.3 112 45.5
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 3.8e-10 68.6 109 45.0
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 3.8e-10 68.6 129 40.3
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 4.9e-10 68.2 83 49.4
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 6.4e-10 67.8 109 45.9
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 6.4e-10 67.8 115 44.3
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 6.4e-10 67.8 115 44.3
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 6.4e-10 67.8 103 45.6
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 8.4e-10 67.4 115 39.1
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-09 67.0 101 45.5
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-09 67.0 114 39.5
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 1.1e-09 67.0 101 45.5
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 2.4e-09 65.9 116 41.4
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 2.4e-09 65.9 116 41.4
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 2.4e-09 65.9 109 41.3
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 2.4e-09 65.9 109 41.3
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 2.4e-09 65.9 100 46.0
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.4e-09 65.9 98 44.9
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 3.2e-09 65.5 107 43.0
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 3.2e-09 65.5 109 41.3
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 3.2e-09 65.5 107 43.0
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 4.2e-09 65.1 101 45.5
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 4.2e-09 65.1 117 41.9
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 5.5e-09 64.7 118 38.1
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 5.5e-09 64.7 120 40.0
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 5.5e-09 64.7 120 40.0
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 5.5e-09 64.7 120 40.0
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 5.5e-09 64.7 87 44.8
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 7.1e-09 64.3 127 39.4
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 7.1e-09 64.3 103 42.7
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 9.3e-09 63.9 120 40.8
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 9.3e-09 63.9 98 45.9
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 9.3e-09 63.9 116 40.5
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 9.3e-09 63.9 120 40.8
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 2.1e-08 62.8 87 44.8
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 2.1e-08 62.8 87 44.8
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 2.1e-08 62.8 82 48.8
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 3.5e-08 62.0 101 43.6
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 3.5e-08 62.0 101 43.6
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 4.6e-08 61.6 96 43.8
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 6.0e-08 61.2 107 41.1
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 1.3e-07 60.1 120 40.0
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 3.0e-07 58.9 84 44.0
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 3.9e-07 58.5 131 35.9
HPP92_003158 Vanilla planifolia HOM05D004695 ORTHO05D005372 3.9e-07 58.5 97 40.2
Peaxi162Scf00134g00214 Petunia axillaris HOM05D004695 ORTHO05D005372 5.1e-07 58.2 75 45.3
Sed0027149 Sechium edule HOM05D004695 ORTHO05D005372 6.7e-07 57.8 100 39.0
HPP92_000387 Vanilla planifolia HOM05D004695 ORTHO05D005372 6.7e-07 57.8 107 38.3
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 8.7e-07 57.4 86 39.5
CsaV3_6G015120 Cucumis sativus L. HOM05D039226 ORTHO05D005372 8.7e-07 57.4 94 40.4
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 1.1e-06 57.0 86 44.2
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 4.3e-06 55.1 113 36.3


User provided reference genes

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