Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 3.2e-170 601.7 303 100.0
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 9.0e-149 530.4 303 89.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 6.9e-141 504.2 305 83.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.0e-140 502.7 303 84.5
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.0e-127 459.5 306 77.5
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.1e-125 453.8 306 75.8
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 5.9e-124 448.0 313 75.1
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 1.7e-123 446.4 310 74.5
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 3.7e-118 428.7 307 72.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 5.5e-114 414.8 307 69.1
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 3.6e-113 412.1 311 70.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-112 409.5 309 69.6
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 6.7e-112 407.9 309 69.3
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 5.0e-99 365.2 306 61.1
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.5e-98 363.6 308 62.7
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 3.0e-96 355.9 339 58.4
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 3.0e-96 355.9 299 60.2
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 8.8e-96 354.4 339 58.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 6.3e-94 348.2 302 61.3
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.8e-93 346.7 302 57.9
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.9e-91 339.3 297 57.6
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 2.9e-91 339.3 297 57.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 9.5e-90 334.3 297 56.9
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-89 333.6 305 58.4
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.6e-89 333.6 299 57.9
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 1.6e-89 333.6 310 57.4
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 8.0e-89 331.3 318 57.9
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-88 329.3 305 57.7
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 4.0e-88 328.9 310 58.7
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 5.2e-88 328.6 311 55.3
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.0e-87 326.6 324 54.3
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-87 326.6 305 60.3
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.7e-87 325.1 305 60.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.3e-86 323.9 308 56.5
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.7e-86 323.6 324 54.3
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.2e-86 323.2 324 54.0
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.8e-85 320.1 305 59.0
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 2.4e-85 319.7 307 55.4
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 2.4e-85 319.7 307 55.7
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.1e-85 318.9 303 55.4
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 9.2e-85 317.8 314 57.6
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 2.0e-84 316.6 305 59.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 2.7e-84 316.2 303 56.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 1.0e-83 314.3 304 55.3
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.3e-83 313.9 309 56.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.3e-83 313.9 313 54.6
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 2.3e-83 313.2 307 55.7
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.3e-83 313.2 306 54.9
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 2.3e-83 313.2 308 55.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 3.9e-83 312.4 308 55.2
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.5e-82 310.5 316 54.7
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.9e-82 310.1 316 55.1
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.2e-81 307.4 309 58.3
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 2.1e-81 306.6 305 55.7
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.6e-81 305.8 304 53.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.6e-81 305.8 310 55.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 3.1e-80 302.8 308 55.5
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 4.0e-80 302.4 300 54.3
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 6.8e-80 301.6 314 55.4
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 5.8e-79 298.5 314 53.5
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.2e-78 296.6 327 53.2
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 2.9e-78 296.2 285 57.2
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 3.7e-78 295.8 298 51.3
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 6.4e-78 295.0 307 53.1
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.9e-77 293.5 310 54.2
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.0e-76 290.0 307 53.1
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.0e-76 290.0 293 52.9
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.7e-76 289.7 304 53.0
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.0e-75 287.7 300 54.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.3e-75 286.6 310 53.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 2.3e-75 286.6 308 51.3
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 4.3e-74 282.3 308 51.3
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-73 280.8 303 52.8
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.6e-73 279.3 256 57.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 4.7e-73 278.9 310 52.3
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 8.1e-73 278.1 311 52.4
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 6.8e-72 275.0 305 53.1
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.5e-71 273.9 307 52.4
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.2e-69 266.2 302 49.0
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 4.1e-69 265.8 307 51.5
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 5.4e-69 265.4 314 51.0
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.7e-68 263.1 290 52.4
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.5e-66 257.3 301 50.5
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.5e-66 256.5 309 48.9
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.6e-65 252.7 249 59.0
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.4e-63 246.1 266 51.9
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.8e-62 242.7 310 47.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 2.4e-61 240.0 392 39.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.5e-60 236.1 310 46.8
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.5e-60 236.1 318 49.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 3.5e-60 236.1 303 46.5
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 7.8e-60 235.0 318 48.1
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.7e-59 233.8 317 49.5
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.3e-59 233.4 317 49.5
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.0e-59 233.0 342 45.9
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 6.6e-59 231.9 308 46.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.1e-58 231.1 308 45.5
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 1.5e-58 230.7 310 46.5
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.3e-58 229.6 316 48.7
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.3e-58 229.2 346 43.4
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 4.3e-58 229.2 318 48.1
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 7.3e-58 228.4 341 43.7
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 9.6e-58 228.0 317 49.2
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 9.6e-58 228.0 317 49.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 6.2e-57 225.3 328 49.1
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 2.0e-55 220.3 233 51.5
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 2.6e-55 219.9 335 43.3
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 9.9e-55 218.0 309 46.0
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-54 217.2 253 49.0
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 6.4e-54 215.3 285 45.6
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 6.0e-52 208.8 308 41.2
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.6e-47 193.4 302 40.1
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 4.5e-47 192.6 313 41.5
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.5e-42 177.6 180 52.2
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-40 171.0 144 57.6
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 9.0e-40 168.3 314 41.7
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.0e-39 167.2 357 37.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 3.4e-39 166.4 303 42.9
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 9.9e-39 164.9 299 39.5
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 3.2e-37 159.8 225 45.3
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 9.3e-37 158.3 166 53.0
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.5e-34 151.0 218 44.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 2.8e-33 146.7 152 53.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.8e-32 144.1 177 47.5
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.5e-31 141.0 115 60.0
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.0e-31 140.6 115 59.1
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 2.2e-30 137.1 251 41.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 3.8e-30 136.3 189 43.4
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 8.4e-30 135.2 159 45.9
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.9e-29 134.0 105 61.9
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-29 134.0 147 50.3
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.5e-29 133.7 177 45.8
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 5.5e-29 132.5 113 63.7
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 5.5e-29 132.5 173 46.2
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 5.5e-29 132.5 158 45.6
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 7.1e-29 132.1 172 45.9
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 7.1e-29 132.1 173 46.2
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.7e-28 130.2 105 60.0
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 6.7e-27 125.6 284 40.1
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.5e-26 124.4 253 37.2
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.9e-26 124.0 284 39.8
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.3e-26 122.9 291 35.4
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 4.3e-26 122.9 284 39.4
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.7e-25 119.8 254 33.9
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 1.5e-23 114.4 123 52.0
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 1.3e-17 94.7 130 42.3
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 4.8e-17 92.8 176 38.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 9.4e-13 78.6 76 56.6
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.4e-11 74.7 103 43.7
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.4e-11 74.7 57 59.6
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.8e-11 74.3 136 41.9
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 3.9e-11 73.2 69 49.3
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.1e-11 72.8 52 63.5
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 3.1e-08 63.5 55 54.5


User provided reference genes

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