Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 4.2e-130 468.0 229 100.0
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.3e-123 446.4 229 94.8
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.2e-116 423.3 229 88.6
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.4e-114 416.4 227 85.9
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 84.7
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 84.7
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 85.6
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.2e-113 413.3 229 85.2
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 3.0e-112 408.7 229 84.3
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 3.0e-112 408.7 229 84.3
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 6.7e-112 407.5 229 83.8
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 8.7e-112 407.1 229 84.3
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.5e-111 406.4 230 83.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.9e-111 406.0 229 82.5
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.3e-110 403.3 227 84.6
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.8e-110 402.1 229 85.2
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 1.1e-106 390.2 226 81.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.4e-106 389.8 226 81.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 2.7e-105 385.6 231 82.7
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 2.7e-105 385.6 232 80.6
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.5e-103 379.8 229 81.2
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 5.6e-103 377.9 226 79.6
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 9.6e-103 377.1 226 77.9
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 4.8e-102 374.8 226 79.2
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 6.2e-102 374.4 226 78.3
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.4e-101 372.5 226 77.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.3e-99 366.7 227 77.5
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.7e-99 366.3 226 77.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.7e-99 366.3 229 76.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 2.2e-99 365.9 227 76.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.9e-99 365.5 226 77.9
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.8e-99 365.2 229 75.5
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 8.4e-99 364.0 228 75.4
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.5e-98 362.5 218 75.7
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.2e-98 362.1 228 75.4
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 3.2e-98 362.1 226 76.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.2e-98 361.7 219 77.2
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 7.1e-98 360.9 227 75.3
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 7.1e-98 360.9 227 77.1
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.6e-97 359.8 228 75.0
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.1e-97 359.4 227 75.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.7e-97 359.0 227 75.8
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 4.6e-97 358.2 248 72.2
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 7.9e-97 357.5 219 75.8
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 7.9e-97 357.5 226 74.3
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.8e-96 356.3 227 73.6
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-96 355.9 219 76.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.3e-96 355.9 229 73.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.9e-96 355.1 226 76.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 5.1e-96 354.8 235 73.6
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.7e-96 354.4 224 74.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.3e-95 352.1 224 75.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.3e-95 351.7 234 73.5
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 7.4e-95 350.9 224 75.9
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 9.7e-95 350.5 224 72.8
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 9.7e-95 350.5 224 75.4
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.3e-94 350.1 227 71.4
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.6e-94 349.7 229 73.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 2.2e-94 349.4 221 73.8
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.8e-94 349.0 227 71.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.8e-94 349.0 227 72.7
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.3e-94 347.8 229 71.6
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.2e-94 347.4 224 74.1
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.4e-93 346.7 226 73.5
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.8e-93 346.3 230 71.3
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.4e-93 345.9 226 72.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 3.1e-93 345.5 218 74.8
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.1e-93 345.1 235 70.2
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 4.1e-93 345.1 226 72.6
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.3e-93 344.7 234 70.1
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 9.0e-93 344.0 225 69.3
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.5e-92 343.2 215 76.3
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 4.5e-92 341.7 226 69.9
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.5e-92 341.7 232 69.4
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.0e-91 340.5 226 69.5
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.0e-91 340.5 226 69.9
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-91 339.0 230 74.8
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 2.9e-91 339.0 230 74.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.0e-91 338.2 226 69.5
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.0e-91 338.2 231 69.7
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.0e-91 338.2 224 74.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 8.5e-91 337.4 230 70.0
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 8.5e-91 337.4 226 69.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.1e-90 337.0 229 70.3
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.1e-90 337.0 227 70.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.4e-90 336.7 227 70.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.4e-90 336.7 221 70.6
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.9e-90 336.3 230 69.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-90 335.9 230 69.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.5e-90 335.9 226 69.9
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.6e-89 333.2 231 68.8
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.6e-89 331.6 231 68.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-89 331.3 226 72.6
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.4e-88 330.1 225 69.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.8e-88 329.7 226 69.9
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.8e-88 329.7 234 69.7
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 3.9e-88 328.6 214 70.1
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 3.9e-88 328.6 214 70.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 6.7e-88 327.8 214 70.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.1e-87 327.0 229 70.3
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 2.0e-87 326.2 234 67.1
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.5e-87 325.9 214 71.5
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.3e-87 325.5 229 69.0
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 7.4e-87 324.3 231 68.8
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 7.4e-87 324.3 231 68.8
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.4e-87 324.3 232 66.8
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 9.7e-87 323.9 227 68.7
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.2e-86 322.8 214 69.2
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.7e-86 322.0 219 69.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 4.8e-86 321.6 210 70.5
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 8.2e-86 320.9 227 68.3
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 8.2e-86 320.9 226 69.0
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 8.2e-86 320.9 269 61.0
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 6.9e-85 317.8 224 68.3
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.4e-84 315.5 222 66.2
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 2.2e-83 312.8 214 67.8
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.4e-82 310.1 227 65.6
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.2e-82 307.8 229 65.9
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 3.3e-79 298.9 232 62.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 5.7e-79 298.1 229 65.5
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 8.2e-78 294.3 230 62.6
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.6e-76 289.3 180 76.7
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 4.5e-76 288.5 219 62.1
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.3e-75 287.0 178 76.4
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 8.5e-75 284.3 227 63.4
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.4e-74 280.8 171 76.0
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.7e-73 279.3 229 63.3
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 7.4e-71 271.2 212 62.3
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.5e-68 262.3 224 54.5
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.2e-67 259.6 232 58.6
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 9.4e-66 254.2 159 75.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.0e-64 250.8 162 72.8
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.2e-60 237.3 157 69.4
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.6e-60 236.9 184 65.8
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.2e-55 220.7 167 65.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.0e-52 209.9 225 47.1
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 2.0e-52 209.9 135 74.8
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 7.7e-52 208.0 228 47.4
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.6e-49 200.3 177 58.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.7e-49 198.7 213 48.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 8.0e-49 198.0 186 55.4
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-48 197.6 132 68.9
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.3e-48 196.4 213 47.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.6e-47 193.0 120 73.3
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.3e-43 180.6 95 92.6
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.4e-37 160.6 225 46.2
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.7e-36 156.4 209 40.2
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.3e-35 154.1 99 69.7
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 5.6e-34 148.7 152 50.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 6.8e-32 141.7 158 48.7
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.6e-28 130.6 214 36.9
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 3.3e-26 122.9 104 60.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 7.6e-23 111.7 90 58.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 1.7e-22 110.5 202 32.2
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.4e-21 107.5 85 65.9
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.4e-21 105.5 67 76.1
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.0e-20 102.1 61 82.0
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.7e-19 100.5 58 84.5
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.7e-19 100.5 58 84.5
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-19 100.1 61 80.3
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.6e-19 98.6 62 75.8
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.8e-17 93.2 107 43.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 6.2e-17 92.0 65 66.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.2e-15 87.8 59 72.9
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 1.4e-13 80.9 214 31.3
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 3.5e-12 76.3 152 32.9
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 4.8e-09 65.9 47 76.6
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.8e-08 63.9 46 76.1
Glyma.U031114 Glycine max HOM05D004213 ORTHO05D005091 1.8e-08 63.9 39 82.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 6.9e-08 62.0 48 62.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 9.9e-07 58.2 39 71.8
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.9e-06 55.8 44 63.6
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 8.4e-06 55.1 37 62.2


User provided reference genes

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