Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.8e-139 499.6 314 100.0
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 9.5e-101 370.9 314 78.7
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.4e-99 367.1 315 78.1
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 7.3e-85 318.2 348 67.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 5.2e-83 312.0 339 64.9
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 5.8e-82 308.5 330 60.3
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 4.3e-77 292.4 335 56.1
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.6e-76 290.4 284 68.7
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.8e-76 289.7 313 57.2
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 5.2e-75 285.4 330 57.0
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 6.8e-75 285.0 309 57.9
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.1e-71 273.5 324 58.6
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 3.9e-70 269.2 335 54.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 3.3e-69 266.2 299 57.2
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 7.3e-69 265.0 323 63.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.6e-69 264.6 329 57.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.6e-68 263.8 316 56.0
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.1e-67 261.2 334 59.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 6.8e-67 258.5 332 56.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 8.9e-67 258.1 356 55.3
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.5e-66 257.3 332 53.0
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 7.6e-66 255.0 339 54.9
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.2e-65 253.4 345 48.4
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.2e-65 253.4 338 55.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 8.4e-65 251.5 333 56.2
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.2e-64 249.6 330 52.1
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 7.1e-64 248.4 337 59.6
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 9.3e-64 248.1 331 59.8
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 6.0e-63 245.4 304 52.0
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.3e-62 243.4 326 56.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.9e-61 240.4 340 57.6
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.5e-61 240.0 350 47.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 5.6e-61 238.8 324 53.1
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 5.6e-61 238.8 338 50.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 7.3e-61 238.4 318 58.5
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 7.3e-61 238.4 335 47.2
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 7.3e-61 238.4 348 47.4
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.3e-60 237.7 336 53.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.6e-60 237.3 299 51.2
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.1e-60 236.9 318 56.0
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-60 236.9 344 51.7
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 2.8e-60 236.5 288 58.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.8e-60 236.5 338 50.3
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.8e-60 236.5 355 54.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.6e-60 236.1 313 47.9
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.8e-60 235.7 311 47.3
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 6.2e-60 235.3 348 46.6
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 8.1e-60 235.0 337 54.0
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 8.1e-60 235.0 332 54.8
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.1e-59 233.0 333 59.5
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.2e-58 231.1 327 61.2
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.0e-58 230.3 353 44.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.8e-58 228.8 347 45.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 7.6e-58 228.4 292 52.7
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 7.6e-58 228.4 292 52.7
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 7.6e-58 228.4 332 53.6
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 9.9e-58 228.0 358 50.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 9.9e-58 228.0 358 50.6
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.7e-57 227.3 321 48.0
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.9e-57 226.5 336 52.7
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.9e-57 225.7 291 54.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 6.4e-57 225.3 360 54.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-56 224.2 347 52.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-56 223.8 280 52.9
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.2e-56 222.6 355 48.7
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 5.4e-56 222.2 280 52.5
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.4e-56 222.2 301 52.5
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 7.1e-56 221.9 361 49.6
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 9.3e-56 221.5 330 49.7
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.2e-55 221.1 354 46.9
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-55 220.7 294 51.4
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-55 220.7 282 53.9
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.6e-55 220.7 294 51.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.6e-55 220.7 294 51.4
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.6e-55 220.7 303 51.8
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.1e-55 220.3 351 49.0
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 2.7e-55 219.9 290 53.4
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 4.6e-55 219.2 317 52.4
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-55 219.2 278 56.1
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.6e-55 219.2 310 58.7
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.0e-55 218.8 343 47.8
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-54 217.6 331 48.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.3e-54 217.6 219 56.6
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.3e-54 216.9 291 52.9
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.9e-54 216.1 312 43.6
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.1e-54 215.7 339 52.2
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 6.6e-54 215.3 301 51.5
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 8.7e-54 214.9 273 48.7
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-53 214.5 311 50.2
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.1e-53 214.5 338 48.5
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.5e-53 214.2 304 51.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.5e-53 213.4 263 56.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.3e-52 211.1 312 45.8
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.3e-52 211.1 349 51.0
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.8e-52 209.9 319 49.8
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.8e-52 209.9 358 48.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.8e-52 209.1 315 46.7
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 4.8e-52 209.1 332 46.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.1e-51 208.0 337 45.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.9e-51 205.3 299 50.5
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.0e-51 204.9 312 47.8
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 9.0e-51 204.9 312 47.8
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.7e-49 200.7 339 52.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.4e-49 198.7 269 52.8
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.1e-48 198.0 328 52.4
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.2e-48 196.4 291 52.9
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 7.1e-48 195.3 321 46.7
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 1.6e-47 194.1 324 54.6
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.1e-47 193.7 338 44.4
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 7.9e-47 191.8 283 49.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.0e-46 191.4 329 46.2
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 3.3e-45 186.4 245 51.8
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 5.6e-45 185.7 358 43.3
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 3.7e-44 183.0 370 42.4
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.4e-43 181.0 285 47.0
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.0e-43 179.5 298 46.6
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.9e-43 178.7 300 45.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.2e-42 177.9 261 52.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.2e-42 177.9 352 45.7
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.5e-42 177.6 333 42.6
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-40 171.4 219 59.4
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.4e-40 171.0 195 56.4
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.9e-40 170.6 307 44.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-40 170.2 351 45.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 5.5e-40 169.1 328 43.6
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.2e-39 167.9 321 48.6
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 4.6e-39 166.0 290 45.2
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.1e-37 161.4 280 43.6
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.7e-37 159.1 213 46.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 8.2e-36 155.2 225 44.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 8.2e-36 155.2 318 40.3
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.4e-35 154.5 241 46.1
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-34 151.0 299 47.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.0e-34 150.6 144 59.0
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.9e-33 146.7 164 54.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 8.5e-33 145.2 350 36.0
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.9e-32 144.1 250 45.2
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.5e-32 143.7 359 42.9
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.2e-31 141.4 304 37.5
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.7e-31 140.2 309 35.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 2.3e-30 137.1 150 52.7
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 2.3e-30 137.1 136 56.6
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.3e-30 137.1 369 38.5
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 8.7e-30 135.2 209 52.6
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.9e-29 134.0 312 38.5
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-28 130.2 260 38.1
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.1e-27 126.7 257 43.6
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.6e-23 114.4 115 56.5
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.3e-22 110.5 113 56.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.7e-20 104.4 151 47.0
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.7e-20 103.2 312 36.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.1e-19 101.7 306 36.9
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.9e-17 93.6 305 32.1
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 3.6e-15 86.7 127 43.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 7.9e-15 85.5 162 38.3
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.9e-09 67.0 92 52.2
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 4.0e-06 56.6 146 34.2


User provided reference genes

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