Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 3.4e-264 914.4 465 100.0
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 1.3e-255 885.9 465 95.5
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.3e-252 875.9 465 94.2
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.9e-251 872.1 460 95.4
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 1.3e-234 816.2 465 86.2
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 6.3e-234 813.9 465 85.8
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.4e-232 808.1 465 84.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.5e-231 803.5 466 86.1
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.9e-230 802.4 466 85.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 3.7e-226 788.1 464 84.5
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 4.8e-226 787.7 464 83.2
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.2e-223 778.9 460 83.5
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.8e-223 778.1 462 83.1
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 2.5e-222 775.4 460 83.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 2.1e-221 772.3 460 83.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 6.7e-212 740.7 454 80.0
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.1e-201 706.8 462 75.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.1e-201 705.3 460 73.9
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.1e-201 705.3 460 73.9
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.4e-201 704.5 465 72.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-200 703.0 465 72.0
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 2.7e-200 702.2 460 73.7
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 7.7e-200 700.7 460 74.1
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.2e-199 699.1 465 72.7
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.9e-199 698.7 460 73.5
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.9e-199 698.7 460 73.0
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.8e-199 698.4 456 73.0
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.1e-197 692.6 460 72.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 2.1e-197 692.6 465 71.4
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.7e-197 692.2 465 74.8
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.7e-197 691.4 465 72.5
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 6.1e-197 691.0 460 73.7
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 8.0e-197 690.6 465 71.8
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 2.3e-196 689.1 460 72.4
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 3.0e-196 688.7 465 71.2
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.0e-196 688.7 460 72.2
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 8.8e-196 687.2 465 71.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.2e-195 686.8 465 71.2
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 1.5e-195 686.4 465 71.0
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.5e-195 684.1 465 71.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.8e-195 683.7 455 72.1
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-194 683.3 460 71.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 4.9e-194 681.4 460 71.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 8.3e-194 680.6 465 70.1
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 8.3e-194 680.6 461 72.2
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.4e-193 679.9 468 69.7
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.4e-193 679.9 457 72.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.4e-193 679.1 470 70.6
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 4.1e-193 678.3 460 71.5
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.2e-192 676.8 461 70.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 1.6e-192 676.4 452 72.3
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.7e-192 675.6 462 71.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.7e-192 675.6 471 70.3
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 3.5e-192 675.2 457 70.7
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 5.9e-192 674.5 460 69.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.0e-191 673.7 460 70.2
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.3e-191 673.3 453 72.0
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 1.3e-191 673.3 471 70.1
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.3e-191 672.5 464 71.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.9e-191 672.2 471 70.1
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.0e-191 671.4 462 70.3
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 5.0e-191 671.4 456 71.9
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.6e-191 671.0 461 69.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.5e-190 669.1 465 69.5
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.3e-190 668.7 461 70.7
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 4.2e-190 668.3 449 71.7
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.2e-190 667.5 465 69.0
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 9.5e-190 667.2 453 71.1
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.1e-189 666.0 454 70.9
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 2.8e-189 665.6 460 69.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.8e-188 662.9 461 69.4
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 4.0e-188 661.8 457 70.5
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 5.2e-188 661.4 463 69.3
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.2e-187 660.2 460 70.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.2e-187 660.2 460 70.4
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.2e-187 660.2 460 70.4
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 4.4e-187 658.3 462 70.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 5.7e-187 657.9 460 70.4
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 9.8e-187 657.1 466 69.5
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 9.8e-187 657.1 465 69.7
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.3e-186 656.8 455 71.0
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.3e-186 656.8 470 68.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.7e-186 656.4 466 68.5
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 8.3e-186 654.1 458 70.1
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 8.3e-186 654.1 391 82.4
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 1.4e-185 653.3 454 69.6
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 5.4e-185 651.4 466 68.0
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 9.2e-185 650.6 455 66.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.2e-184 650.2 466 68.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.6e-184 649.8 466 68.0
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.0e-184 649.4 386 82.4
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.5e-184 648.7 466 67.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-184 648.7 466 67.6
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.5e-184 648.7 466 67.6
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 7.8e-184 647.5 460 67.8
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 7.8e-184 647.5 465 68.4
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.0e-183 647.1 467 68.3
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 3.9e-183 645.2 433 72.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 5.0e-183 644.8 467 67.7
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 8.6e-183 644.0 467 67.7
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 8.6e-183 644.0 467 67.7
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.5e-182 643.3 460 67.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 9.5e-182 640.6 462 67.7
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.2e-181 640.2 461 68.1
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 1.2e-181 640.2 461 66.4
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.6e-181 639.8 443 70.2
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 6.1e-181 637.9 467 68.1
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 6.8e-180 634.4 465 70.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.5e-179 630.9 459 67.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.2e-178 629.4 461 67.5
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 1.9e-177 626.3 452 67.7
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.4e-177 625.9 460 66.7
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 1.2e-173 613.6 449 67.7
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.1e-172 610.5 457 63.5
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.2e-168 597.0 466 62.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 1.6e-160 570.1 458 59.8
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.9e-158 563.1 462 58.7
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.3e-158 562.4 460 59.8
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 3.6e-157 558.9 386 71.0
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.1e-156 557.4 385 70.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 7.8e-152 541.2 366 69.4
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.3e-151 540.4 383 67.6
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 3.3e-134 482.6 358 65.1
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.9e-127 459.1 318 69.2
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 2.8e-125 453.0 472 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 7.6e-123 444.9 484 46.1
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.2e-121 439.1 458 47.2
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 9.3e-121 438.0 342 62.0
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.1e-118 431.0 282 72.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 4.6e-112 409.1 504 41.3
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.4e-103 380.9 508 38.4
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.7e-90 337.4 224 75.9
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 4.9e-77 292.7 173 83.2
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.9e-74 283.5 180 82.8
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 6.1e-72 275.8 186 71.5
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-68 263.8 194 64.9
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 2.1e-56 224.2 159 71.7
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 1.4e-52 211.5 155 68.4
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.6e-50 202.2 126 73.8
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.5e-30 138.3 73 91.8
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 6.4e-29 132.9 77 79.2
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 4.2e-28 130.2 71 87.3
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.2e-28 130.2 76 78.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 9.3e-28 129.0 95 63.2
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 4.6e-27 126.7 150 46.7
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 8.7e-26 122.5 92 65.2
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.1e-24 115.9 111 54.1
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.3e-21 108.6 470 24.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 1.5e-14 85.1 52 76.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 2.5e-12 77.8 68 51.5
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 2.5e-12 77.8 68 51.5
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 4.6e-11 73.6 46 80.4
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.1e-07 62.4 48 58.3
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 1.2e-06 58.9 52 53.8
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 5.9e-06 56.6 48 54.2


User provided reference genes

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