Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.3e-70 269.6 136 100.0
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.3e-62 243.0 140 89.3
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.1e-60 235.7 141 87.2
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 3.2e-53 211.8 137 81.8
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 9.9e-39 163.7 142 65.5
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 2.9e-38 162.2 146 65.8
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 1.6e-36 156.4 146 68.5
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.3e-35 153.3 145 64.1
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 6.2e-33 144.4 145 63.4
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 6.5e-30 134.4 144 59.7
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.1e-29 133.7 143 58.7
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 6.0e-28 127.9 143 55.9
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 8.7e-27 124.0 142 58.5
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 8.2e-25 117.5 149 53.7
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 2.4e-24 115.9 155 53.5
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.0e-22 110.5 138 46.4
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 1.1e-21 107.1 137 50.4
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 4.2e-21 105.1 157 52.2
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 5.5e-21 104.8 144 50.0
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 7.2e-21 104.4 137 50.4
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 9.4e-21 104.0 139 53.2
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 9.4e-21 104.0 138 45.7
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.2e-20 103.6 140 50.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 2.1e-20 102.8 139 51.8
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.1e-18 97.1 170 45.9
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 2.5e-18 95.9 138 45.7
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 7.4e-18 94.4 141 45.4
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 4.8e-17 91.7 140 46.4
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 5.3e-16 88.2 136 46.3
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 6.9e-16 87.8 137 45.3
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.5e-15 86.7 136 42.6
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.5e-15 86.7 141 44.7
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.0e-15 86.3 144 43.8
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.7e-14 83.2 158 43.0
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 1.7e-14 83.2 140 43.6
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.1e-13 80.5 141 42.6
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 4.2e-13 78.6 145 48.3
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.2e-13 77.8 155 46.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 7.2e-13 77.8 137 40.9
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea HOM05D004793 ORTHO05D038859 1.2e-12 77.0 170 38.8
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.2e-12 77.0 137 46.0
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.1e-12 76.3 137 41.6
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.7e-12 75.9 146 42.5
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 3.6e-12 75.5 136 41.9
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 6.1e-12 74.7 139 43.9
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 6.1e-12 74.7 138 42.0
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.1e-12 74.7 141 40.4
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 6.1e-12 74.7 141 40.4
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 6.1e-12 74.7 136 41.2
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 7.9e-12 74.3 152 44.1
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 1.4e-11 73.6 138 41.3
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.4e-11 73.6 136 40.4
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 1.8e-11 73.2 153 44.4
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 2.3e-11 72.8 169 39.6
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 2.3e-11 72.8 160 41.2
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 3.0e-11 72.4 137 40.9
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 3.0e-11 72.4 145 38.6
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.9e-11 72.0 137 41.6
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 3.9e-11 72.0 150 39.3
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.9e-11 72.0 136 44.9
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 1.5e-10 70.1 145 40.0
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-10 69.7 137 43.1
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.0e-10 69.7 147 43.5
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 2.0e-10 69.7 144 42.4
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.3e-10 68.9 158 42.4
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.4e-10 68.6 139 41.7
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 5.7e-10 68.2 142 43.0
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.7e-10 68.2 141 39.7
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 5.7e-10 68.2 141 39.7
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 7.4e-10 67.8 138 41.3
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 7.4e-10 67.8 139 39.6
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 2.8e-09 65.9 149 40.9
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.7e-09 65.5 158 39.9
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.8e-09 65.1 136 41.2
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 6.3e-09 64.7 135 39.3
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 6.3e-09 64.7 135 39.3
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 6.3e-09 64.7 141 41.1
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 8.2e-09 64.3 136 41.2
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 8.2e-09 64.3 138 38.4
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.1e-08 63.9 136 40.4
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.1e-08 63.9 139 41.7
Atru.chr1.2342 Acer truncatum HOM05D004793 ORTHO05D004423 1.4e-08 63.5 171 36.3
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.4e-08 63.5 153 38.6
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.4e-08 63.5 141 38.3
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.8e-08 63.2 124 39.5
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.8e-08 63.2 156 39.1
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.8e-08 63.2 138 38.4
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 2.4e-08 62.8 145 39.3
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 2.4e-08 62.8 141 35.5
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 3.1e-08 62.4 138 39.9
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 4.1e-08 62.0 157 34.4
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 5.3e-08 61.6 135 35.6
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.0e-08 61.2 135 40.0
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 7.0e-08 61.2 136 40.4
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 9.1e-08 60.8 137 38.7
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.2e-07 60.5 141 36.9
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 1.2e-07 60.5 138 37.0
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 1.2e-07 60.5 136 34.6
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 1.2e-07 60.5 145 40.0
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 1.5e-07 60.1 164 38.4
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 1.5e-07 60.1 137 39.4
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 2.0e-07 59.7 165 38.2
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 2.6e-07 59.3 164 34.1
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 2.6e-07 59.3 141 39.7
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-07 59.3 110 34.5
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 3.4e-07 58.9 139 38.1
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 3.4e-07 58.9 138 37.0
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 4.5e-07 58.5 136 33.8
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 4.5e-07 58.5 137 38.7
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 5.9e-07 58.2 126 38.9
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 5.9e-07 58.2 140 37.9
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 5.9e-07 58.2 140 35.0
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.7e-07 57.8 136 36.0
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.7e-07 57.8 136 36.0
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.0e-06 57.4 138 34.8
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 1.7e-06 56.6 90 42.2
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 2.2e-06 56.2 117 39.3
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 2.9e-06 55.8 150 34.7
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 2.9e-06 55.8 59 55.9
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 2.9e-06 55.8 59 55.9
Solyc11g012520.1 Solanum lycopersicum HOM05D018828 ORTHO05D004423 2.9e-06 55.8 137 37.2
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 6.5e-06 54.7 141 34.0
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 6.5e-06 54.7 136 39.0
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 6.5e-06 54.7 136 32.4
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 6.5e-06 54.7 138 36.2
HPP92_023588 Vanilla planifolia HOM05D020977 ORTHO05D004423 8.5e-06 54.3 73 47.9
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 8.5e-06 54.3 144 36.1


User provided reference genes

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