Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.2e-278 961.1 475 100.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 5.1e-223 777.7 452 87.8
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 8.5e-186 654.1 454 75.3
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 6.1e-160 568.2 468 66.2
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 7.0e-148 528.1 454 64.3
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.5e-147 525.8 454 63.7
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 7.1e-116 421.8 477 52.8
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 7.3e-113 411.8 485 49.3
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 4.7e-112 409.1 455 52.7
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 1.1e-111 407.9 465 50.1
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.4e-108 397.5 447 51.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-108 396.4 457 49.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.4e-108 395.6 460 49.3
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 5.4e-108 395.6 470 49.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 6.0e-107 392.1 470 49.6
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.0e-106 389.8 456 47.6
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.9e-106 389.4 452 50.4
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 6.6e-106 388.7 468 49.1
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 8.7e-106 388.3 439 50.1
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 8.7e-106 388.3 437 51.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-105 387.9 476 48.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 5.6e-105 385.6 526 46.0
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-104 384.0 442 51.1
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-104 384.0 437 49.2
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.6e-104 384.0 437 49.2
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.4e-103 380.9 463 49.5
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.4e-103 380.2 442 49.3
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.0e-103 379.4 463 48.8
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.2e-102 377.9 472 46.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.4e-102 376.3 469 48.6
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 3.4e-102 376.3 466 48.1
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 7.6e-102 375.2 432 49.1
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.2e-101 373.6 451 49.2
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.9e-101 373.2 465 49.0
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.9e-101 372.5 477 48.8
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 1.9e-100 370.5 450 48.2
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 7.1e-100 368.6 429 50.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.1e-99 367.1 458 45.6
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.5e-99 366.3 448 48.4
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-98 364.0 449 47.4
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 3.9e-98 362.8 430 50.5
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.5e-97 360.1 478 47.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 7.4e-97 358.6 494 46.0
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 7.4e-97 358.6 462 47.2
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 6.2e-96 355.5 400 51.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 4.0e-95 352.8 426 45.1
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 5.3e-95 352.4 471 47.1
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.9e-95 352.1 413 48.9
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.9e-94 348.2 420 48.3
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 7.1e-92 342.0 477 46.1
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.1e-89 334.7 457 43.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 8.2e-88 328.6 495 42.8
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-86 323.6 394 48.5
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.3e-81 306.2 385 47.8
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 2.0e-78 297.4 433 46.2
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.6e-78 297.0 452 43.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.1e-75 287.3 425 42.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 2.6e-70 270.4 427 40.5
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 8.5e-69 265.4 410 40.2
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 4.2e-68 263.1 421 38.7
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.0e-65 254.2 423 39.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 9.7e-65 251.9 422 38.9
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 5.3e-63 246.1 418 36.1
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 6.9e-63 245.7 419 37.9
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 9.1e-63 245.4 407 36.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.2e-62 245.0 418 36.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.0e-62 244.2 422 37.7
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.6e-62 243.8 418 35.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 7.7e-62 242.3 418 35.9
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 7.7e-62 242.3 418 35.9
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.8e-61 240.0 416 34.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 3.8e-61 240.0 410 35.6
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.8e-61 240.0 432 36.1
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.1e-60 238.4 431 34.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.1e-60 238.4 442 36.9
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-60 238.4 340 46.2
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.5e-60 236.1 424 37.5
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.1e-59 234.2 413 38.0
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 6.7e-58 229.2 436 37.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.7e-57 226.1 468 33.8
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 9.7e-57 225.3 362 40.6
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.7e-57 225.3 413 35.4
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 4.8e-56 223.0 435 36.3
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.2e-56 222.2 414 35.5
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.9e-53 213.8 414 36.5
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 6.5e-53 212.6 417 35.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.9e-52 211.1 424 33.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.2e-52 209.9 404 36.4
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 9.4e-52 208.8 440 37.3
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.2e-51 208.4 318 43.4
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.6e-51 208.0 166 60.8
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.1e-51 207.6 365 35.9
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.6e-49 200.7 422 33.9
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.8e-48 197.2 341 36.1
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 2.8e-48 197.2 350 37.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.4e-47 194.9 387 35.7
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.6e-46 191.4 338 38.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 5.9e-46 189.5 411 34.3
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 5.9e-46 189.5 343 39.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.9e-44 184.5 329 35.9
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.5e-44 184.1 335 36.7
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 7.2e-44 182.6 346 34.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.0e-42 178.7 376 33.5
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-42 178.7 306 36.9
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 5.2e-42 176.4 409 29.8
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 7.5e-41 172.6 353 33.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.3e-40 169.5 213 47.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.3e-40 169.5 406 31.5
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 4.1e-39 166.8 359 33.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.6e-38 164.9 355 33.2
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.7e-38 164.1 140 58.6
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.9e-37 160.6 368 34.8
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 8.6e-37 159.1 355 31.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-36 157.5 259 43.2
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-35 154.8 161 46.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.3e-34 151.0 356 31.2
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 3.0e-34 150.6 163 48.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.2e-33 148.7 132 51.5
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 6.3e-32 142.9 283 34.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.4e-31 141.7 279 35.8
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.4e-31 141.7 279 35.8
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.4e-31 141.7 225 43.1
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.8e-31 141.4 105 61.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.5e-30 137.1 341 32.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.3e-29 134.4 343 30.9
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.8e-29 133.7 366 32.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-28 131.7 161 42.9
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.9e-28 131.3 150 49.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 9.5e-28 129.0 344 32.0
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 4.7e-27 126.7 143 49.0
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-26 125.2 143 48.3
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.4e-25 120.2 145 44.8
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 7.5e-25 119.4 140 47.1
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.9e-23 114.8 275 29.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.9e-23 114.8 347 31.1
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 7.0e-23 112.8 139 38.1
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.0e-22 111.3 111 51.4
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.0e-21 107.5 121 44.6
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 5.8e-17 93.2 117 46.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.9e-16 90.1 162 35.8
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-13 82.4 109 43.1
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 1.1e-12 79.0 77 50.6
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.7e-11 73.6 119 38.7
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 4.0e-10 70.5 100 36.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 4.1e-07 60.5 69 47.8
COL.COLO4_16251 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.6e-06 58.5 74 44.6


User provided reference genes

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