Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.7e-153 545.4 299 100.0
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 1.6e-134 483.0 293 90.8
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 2.4e-133 479.2 294 90.8
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 6.4e-131 471.1 278 94.2
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 5.1e-128 461.5 294 87.1
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 2.5e-127 459.1 293 87.0
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 9.6e-127 457.2 293 86.7
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 9.9e-124 447.2 295 84.7
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 9.9e-124 447.2 294 84.7
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 8.4e-123 444.1 311 81.0
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 7.1e-122 441.0 298 84.6
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 8.1e-110 401.0 324 71.3
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 3.2e-106 389.0 293 74.7
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 1.6e-105 386.7 297 73.7
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 2.7e-105 386.0 295 74.9
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.8e-104 383.3 296 73.0
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 2.5e-103 379.4 294 72.4
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 4.8e-102 375.2 294 72.8
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 6.2e-102 374.8 296 72.0
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 6.2e-102 374.8 294 72.4
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 8.2e-102 374.4 295 72.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-101 374.0 293 71.7
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 2.4e-101 372.9 294 72.1
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.4e-101 372.9 294 71.1
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.2e-100 370.5 295 71.5
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 1.5e-100 370.2 296 71.3
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 7.6e-100 367.9 282 73.4
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.7e-99 366.7 295 70.8
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 1.4e-98 363.6 294 69.4
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.6e-97 360.1 293 70.3
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 1.6e-97 360.1 292 70.2
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.6e-97 358.6 293 70.0
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.3e-96 357.1 293 70.0
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.8e-96 356.7 297 69.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.3e-96 356.3 293 69.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 3.0e-96 355.9 299 68.9
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 3.9e-96 355.5 293 69.6
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 3.9e-96 355.5 329 63.2
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 8.7e-96 354.4 263 73.8
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-95 353.2 297 69.4
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-95 353.2 297 69.4
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.9e-95 353.2 291 69.4
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 5.7e-95 351.7 296 68.2
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 3.7e-94 349.0 297 68.0
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.1e-93 347.4 297 69.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.4e-93 346.3 295 68.1
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.1e-93 345.9 298 67.8
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 1.5e-92 343.6 298 66.1
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 2.6e-92 342.8 294 67.0
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 4.5e-92 342.0 299 66.6
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 1.7e-91 340.1 293 68.6
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 2.9e-91 339.3 304 64.5
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 3.8e-91 339.0 301 64.1
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 5.0e-91 338.6 300 65.7
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 3.2e-90 335.9 296 65.9
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 4.2e-90 335.5 296 64.5
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.6e-89 333.6 293 65.5
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 2.7e-89 332.8 296 66.9
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 2.7e-89 332.8 296 66.9
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 3.6e-89 332.4 295 66.8
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 3.6e-89 332.4 295 66.8
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 7.9e-89 331.3 294 65.6
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 7.9e-89 331.3 296 66.6
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.0e-88 330.9 295 66.4
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.0e-88 330.9 295 66.8
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.4e-88 330.5 296 66.6
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 8.8e-88 327.8 293 64.8
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.5e-87 327.0 294 65.6
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 4.3e-87 325.5 297 65.3
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 7.4e-87 324.7 263 68.4
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 9.7e-87 324.3 293 66.6
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 1.3e-86 323.9 293 66.2
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 1.7e-86 323.6 295 65.1
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 2.2e-86 323.2 259 71.4
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 6.3e-86 321.6 303 63.7
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.8e-85 320.1 359 56.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 5.3e-85 318.5 321 60.7
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.2e-84 317.4 297 64.3
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.9e-84 315.1 293 62.8
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 1.3e-83 313.9 301 64.1
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.7e-83 313.5 262 67.2
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 2.2e-83 313.2 294 65.0
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 2.9e-83 312.8 258 69.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.9e-83 312.8 309 59.9
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 6.5e-83 311.6 302 61.3
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 6.5e-83 311.6 292 63.0
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.9e-82 310.1 295 63.1
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 7.2e-82 308.1 295 62.7
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 9.4e-82 307.8 294 62.2
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 2.1e-81 306.6 388 51.8
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.6e-81 305.8 385 50.9
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 1.0e-80 304.3 295 63.1
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 2.3e-80 303.1 372 53.5
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 3.0e-80 302.8 272 64.3
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 5.7e-79 298.5 257 66.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 7.4e-79 298.1 294 62.6
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 7.4e-79 298.1 213 77.5
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 9.7e-79 297.7 294 63.3
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.4e-77 293.9 250 66.8
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 3.5e-76 289.3 263 64.3
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 6.5e-75 285.0 301 58.1
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 2.3e-72 276.6 299 56.5
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 7.0e-69 265.0 198 75.3
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 9.1e-69 264.6 238 66.8
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 1.6e-68 263.8 295 57.3
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 5.9e-68 261.9 221 66.5
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 3.2e-66 256.1 249 59.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 1.4e-64 250.8 293 57.3
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 4.8e-62 242.3 215 66.5
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.1e-61 241.1 178 77.5
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 5.0e-59 232.3 184 72.3
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 3.6e-57 226.1 175 72.6
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 4.0e-56 222.6 306 52.9
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.0e-51 208.0 183 68.9
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.5e-50 204.1 182 65.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.4e-47 193.0 240 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 4.4e-47 192.6 240 45.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.8e-47 191.4 149 71.1
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 2.7e-44 183.3 238 47.5
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 5.9e-44 182.2 271 45.4
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.0e-43 181.4 220 47.3
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.6e-41 172.9 119 74.8
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 8.3e-38 161.8 230 45.2
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 8.3e-38 161.8 241 39.8
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 4.1e-37 159.5 162 59.3
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.3e-35 154.5 171 54.4
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 9.8e-31 138.3 119 60.5
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 9.2e-29 131.7 229 38.0
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 5.1e-27 125.9 82 84.1
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 6.8e-24 115.5 173 45.7
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.2e-22 110.5 118 55.1
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 3.7e-22 109.8 130 53.8
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 8.6e-19 98.6 105 55.2
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 2.5e-18 97.1 105 54.3
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 3.3e-18 96.7 98 56.1
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 1.2e-17 94.7 105 54.3
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.3e-09 68.2 182 28.6
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.3e-09 68.2 62 61.3
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 5.8e-07 59.3 199 31.7
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 4.9e-06 56.2 46 65.2
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 4.9e-06 56.2 46 65.2
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 4.9e-06 56.2 46 65.2
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 4.9e-06 56.2 46 65.2


User provided reference genes

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