Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.9e-257 891.3 442 100.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.2e-230 800.8 431 90.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.2e-228 795.4 444 88.5
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 9.2e-227 790.0 436 88.8
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 3.1e-222 775.0 410 92.2
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-207 726.5 440 80.7
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 5.1e-201 704.5 447 78.7
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.9e-200 702.6 447 78.7
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.9e-196 688.7 433 77.6
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.0e-193 680.2 436 77.8
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 5.1e-193 677.9 350 94.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.0e-190 668.3 440 75.2
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 8.4e-188 660.6 416 77.9
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.9e-187 659.4 441 75.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.5e-184 649.8 437 72.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 2.1e-183 646.0 445 74.4
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 7.6e-181 637.5 432 74.8
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 6.5e-180 634.4 437 71.6
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.1e-179 633.6 433 73.7
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.4e-179 633.3 439 71.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 4.6e-178 628.2 433 71.6
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.6e-178 628.2 440 70.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.8e-177 626.3 433 70.0
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 1.8e-177 626.3 440 70.7
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.8e-177 626.3 440 70.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 3.0e-177 625.5 433 71.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.5e-176 623.2 433 70.4
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.3e-176 622.1 441 70.3
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.2e-175 619.4 430 69.8
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 6.3e-175 617.8 433 70.7
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.3e-174 614.8 432 70.4
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 2.0e-173 612.8 441 68.5
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.5e-173 611.7 439 68.8
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.3e-172 610.1 435 70.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-172 609.8 435 68.0
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 5.0e-172 608.2 433 69.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.5e-172 607.8 439 68.3
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.1e-171 607.1 439 67.7
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.4e-171 606.7 432 68.3
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.2e-171 605.5 435 68.3
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 4.2e-171 605.1 439 67.9
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 5.5e-171 604.7 433 68.6
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.2e-171 604.4 433 68.6
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-170 603.2 438 67.8
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.1e-170 602.8 439 67.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.6e-170 601.7 444 66.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 2.3e-169 599.4 438 66.4
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 3.0e-169 599.0 439 66.7
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 8.8e-169 597.4 434 67.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.7e-168 594.7 438 66.2
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.7e-167 593.2 437 65.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 6.3e-167 591.3 427 67.7
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.1e-166 589.0 431 67.3
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 4.1e-166 588.6 432 68.5
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 9.1e-166 587.4 433 65.4
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.1e-166 587.4 431 66.8
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.2e-165 587.0 414 67.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.5e-165 586.6 431 67.1
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.5e-165 585.1 386 74.9
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 5.9e-165 584.7 432 66.2
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 5.0e-164 581.6 433 66.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 5.5e-163 578.2 400 72.2
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 2.1e-162 576.2 439 63.6
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.0e-161 573.9 439 65.1
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.0e-161 573.9 439 65.1
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.0e-161 572.4 430 65.1
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 9.7e-160 567.4 434 64.3
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 9.7e-160 567.4 432 63.0
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.8e-159 565.8 435 65.1
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 6.3e-159 564.7 431 64.7
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 8.2e-159 564.3 432 63.7
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 434 63.6
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 5.3e-158 561.6 438 62.8
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 7.0e-158 561.2 432 63.2
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.0e-157 559.7 432 63.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.0e-156 557.4 432 62.7
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 8.5e-156 554.3 430 62.8
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.1e-155 553.9 435 63.4
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 2.5e-155 552.7 395 70.1
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.2e-154 550.4 431 62.2
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 6.1e-154 548.1 431 62.4
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.4e-153 547.0 442 62.9
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.1e-152 543.9 439 60.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 3.7e-151 538.9 431 61.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.0e-149 533.1 444 61.5
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.3e-148 530.4 432 61.3
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.1e-147 527.3 437 62.5
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.5e-147 526.2 462 60.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.6e-146 523.5 439 62.2
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.7e-146 521.9 439 62.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 6.1e-146 521.5 439 60.8
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.0e-145 520.8 384 65.1
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.0e-145 520.8 436 62.2
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.0e-145 519.2 439 61.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.2e-145 518.5 433 61.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.5e-144 516.9 350 70.0
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.7e-144 514.2 439 62.0
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.7e-144 514.2 439 62.0
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.8e-143 512.7 445 60.2
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.8e-143 512.7 434 60.8
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.7e-143 512.3 437 61.1
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 4.8e-143 511.9 437 61.1
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 8.3e-143 511.1 439 60.1
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.1e-142 509.2 446 59.9
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 4.1e-142 508.8 442 61.3
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 4.1e-142 508.8 442 61.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 5.3e-142 508.4 427 58.8
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.7e-141 506.1 435 60.2
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.9e-141 505.0 446 59.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 7.7e-141 504.6 435 60.2
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.0e-140 504.2 432 60.4
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.0e-140 504.2 431 60.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.5e-139 499.6 430 57.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.7e-138 495.4 427 57.1
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.4e-137 493.8 370 66.2
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.4e-137 493.8 431 59.6
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.8e-136 487.6 423 58.9
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.3e-135 487.3 351 66.4
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.1e-134 484.2 349 65.9
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 9.1e-134 481.1 409 57.7
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.5e-131 473.8 433 57.7
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.3e-129 466.5 361 64.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 9.2e-126 454.5 433 56.8
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.1e-123 447.6 321 67.6
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.3e-116 423.3 335 63.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.6e-114 417.2 351 61.3
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.1e-109 400.2 431 51.5
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 9.9e-104 381.3 383 54.6
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.1e-99 367.9 313 58.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.1e-99 367.9 313 58.8
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.7e-98 362.5 388 50.3
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 6.8e-97 358.6 253 71.5
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 6.4e-95 352.1 386 49.2
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.7e-85 320.1 189 81.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.6e-66 257.7 252 54.8
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.3e-63 248.1 384 41.9
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 4.6e-61 239.6 166 67.5
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.0e-55 221.9 264 48.9
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.0e-55 221.9 164 64.6
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 6.1e-37 159.5 153 51.0
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.1e-37 159.5 107 70.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 2.2e-31 141.0 138 58.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.9e-30 137.9 110 68.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 2.1e-29 134.4 111 65.8
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 2.8e-26 124.0 96 57.3
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 7.5e-11 72.8 52 61.5


User provided reference genes

Program Settings