Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 7.3e-203 710.3 350 100.0
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 4.0e-193 677.9 350 94.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 2.0e-184 649.0 350 89.4
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 7.1e-182 640.6 351 88.9
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.3e-180 636.3 352 88.6
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 5.3e-177 624.4 332 90.7
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.6e-168 595.5 348 81.6
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 3.0e-164 582.0 349 80.2
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 9.7e-163 577.0 350 80.3
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 6.3e-162 574.3 351 80.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 4.2e-158 561.6 352 78.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 9.4e-158 560.5 352 78.4
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.4e-153 545.8 352 74.7
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.0e-152 542.7 349 77.7
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 2.6e-152 542.3 348 75.6
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.3e-151 540.0 349 74.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.7e-151 539.7 349 76.5
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 2.2e-151 539.3 348 74.7
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.2e-149 533.5 350 74.0
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-149 533.5 349 77.1
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.2e-149 533.5 350 72.9
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.7e-149 531.6 350 74.0
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 4.0e-148 528.5 350 73.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 6.7e-148 527.7 350 72.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.5e-147 526.6 350 71.7
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.6e-147 525.8 350 70.6
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 7.5e-147 524.2 350 72.0
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.2e-146 522.7 352 73.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.8e-146 522.3 349 70.2
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.7e-146 521.9 350 72.3
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.8e-146 521.5 349 72.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 6.3e-146 521.2 350 72.0
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-145 520.4 350 70.0
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.8e-145 519.6 352 71.3
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 5.3e-145 518.1 350 70.3
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 5.3e-145 518.1 350 70.6
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.0e-145 517.7 349 70.8
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.2e-144 516.9 349 72.8
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.2e-144 516.9 350 74.0
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.5e-144 515.0 350 69.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-143 513.5 350 69.7
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-143 513.1 350 70.0
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.2e-143 512.7 350 69.4
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.9e-143 512.3 350 70.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.8e-143 511.9 354 68.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.1e-142 510.4 350 70.9
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.1e-142 510.4 349 69.1
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.5e-142 510.0 350 70.0
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.9e-142 509.6 349 68.2
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.9e-142 509.6 350 69.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.5e-142 509.2 354 72.0
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.2e-142 508.8 351 68.7
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 9.4e-142 507.3 350 70.3
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.0e-141 504.2 350 68.9
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 8.0e-141 504.2 350 69.7
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.0e-140 503.8 350 70.0
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.3e-140 502.7 349 67.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.0e-140 501.9 350 68.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.0e-140 501.9 350 68.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 8.8e-140 500.7 350 68.0
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 8.3e-138 494.2 350 67.1
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 8.3e-138 494.2 350 66.9
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.4e-137 493.4 350 66.9
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.8e-137 493.0 349 66.8
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.8e-137 493.0 350 65.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.8e-137 493.0 350 66.6
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 2.4e-137 492.7 350 67.4
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.1e-137 492.3 349 67.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.0e-136 489.6 353 68.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.0e-136 489.6 353 68.0
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.0e-136 489.6 350 66.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.7e-136 489.2 350 66.6
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 2.7e-136 489.2 350 66.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 5.9e-136 488.0 352 66.2
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 2.9e-135 485.7 351 66.7
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.5e-134 483.4 350 65.4
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 1.5e-134 483.4 350 66.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 4.2e-134 481.9 351 67.2
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 5.5e-134 481.5 351 67.2
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.6e-133 479.9 349 66.2
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-132 476.9 350 66.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.8e-132 476.5 350 65.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 4.0e-132 475.3 350 64.3
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.2e-131 473.8 350 65.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 4.4e-131 471.9 350 64.9
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-129 466.8 355 65.9
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.4e-129 466.8 349 64.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 3.1e-129 465.7 363 63.1
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 7.0e-129 464.5 350 63.4
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.8e-128 461.1 355 65.1
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.3e-127 459.5 350 64.0
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.3e-127 459.5 358 65.6
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.8e-127 458.8 306 73.5
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 4.3e-126 455.3 357 62.2
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.2e-125 453.8 361 63.4
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.2e-125 453.8 361 61.5
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 6.1e-125 451.4 353 64.3
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 8.0e-125 451.1 321 68.8
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.0e-124 448.7 362 62.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.2e-124 448.4 352 63.6
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 6.8e-124 448.0 362 63.0
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.4e-123 445.3 361 63.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.3e-122 443.7 356 63.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.7e-122 443.4 351 62.1
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.7e-122 443.4 356 63.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.9e-122 442.6 358 64.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.9e-122 442.6 358 64.2
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.9e-122 442.6 350 62.0
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 3.7e-122 442.2 356 63.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 6.4e-122 441.4 356 61.2
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 8.3e-122 441.0 357 63.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.4e-121 440.3 348 60.9
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.9e-121 439.9 357 63.0
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 3.2e-121 439.1 356 63.5
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 3.2e-121 439.1 353 62.6
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-120 436.0 350 63.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-120 436.0 350 63.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 4.6e-120 435.3 348 60.1
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 6.6e-119 431.4 348 59.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.2e-117 427.2 353 61.8
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.4e-113 412.9 328 61.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.3e-106 390.6 282 67.4
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.7e-106 389.0 349 58.7
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.4e-105 386.3 350 57.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 5.1e-103 378.6 299 63.5
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.2e-98 363.2 342 56.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 6.2e-93 345.1 272 64.0
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.1e-85 320.1 190 81.6
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.5e-83 313.9 355 48.2
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 9.9e-83 311.2 307 55.4
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 2.4e-81 306.6 251 58.6
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 2.4e-81 306.6 251 58.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 5.1e-79 298.9 353 47.0
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.1e-60 238.0 156 73.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 9.0e-60 235.0 143 75.5
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.0e-55 221.5 164 64.6
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.0e-54 217.2 263 47.5
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.9e-49 200.7 302 42.4
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.8e-47 191.8 175 56.6
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 6.3e-37 159.1 107 70.1
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.2e-35 154.8 153 51.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.8e-31 141.0 138 58.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.5e-30 137.9 110 68.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.7e-29 134.4 111 65.8
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.2e-27 128.3 96 59.4
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 5.4e-12 76.3 52 61.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 9.8e-06 55.5 54 46.3


User provided reference genes

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