Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 7.5e-308 1059.7 534 100.0
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 6.0e-273 943.7 534 88.2
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 1.6e-254 882.5 567 82.0
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 3.7e-246 854.7 532 81.6
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 8.8e-240 833.6 531 78.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 3.1e-237 825.1 577 73.7
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 7.7e-236 820.5 533 78.2
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 2.7e-233 812.0 533 77.3
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 8.5e-227 790.4 534 75.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-220 770.0 547 72.6
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.7e-220 768.8 588 69.2
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 3.6e-217 758.4 500 77.0
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 4.8e-214 748.0 538 70.1
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 9.1e-213 743.8 539 69.4
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 2.8e-209 732.3 535 70.8
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 1.3e-206 723.4 535 69.2
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 5.4e-205 718.0 536 69.4
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.7e-204 715.7 537 67.8
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 3.5e-204 715.3 538 67.1
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 4.5e-204 714.9 536 67.9
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 7.8e-204 714.1 527 68.1
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 2.3e-203 712.6 527 67.9
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 6.6e-203 711.1 530 67.5
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 1.1e-202 710.3 529 69.4
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.5e-202 709.9 532 68.4
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.9e-202 709.5 529 68.4
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 9.5e-202 707.2 529 69.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.6e-201 706.4 522 69.2
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 2.8e-201 705.7 524 67.6
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 8.0e-201 704.1 537 67.2
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 1.8e-200 703.0 532 67.3
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 2.3e-200 702.6 538 66.4
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 5.2e-200 701.4 535 67.3
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 6.8e-200 701.0 535 66.7
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 8.9e-200 700.7 531 66.9
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 1.2e-199 700.3 538 66.2
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 1.5e-199 699.9 524 68.3
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.4e-199 698.7 531 68.0
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.3e-198 696.8 555 64.5
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 8.3e-198 694.1 538 66.5
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.1e-197 693.7 538 66.5
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.5e-196 688.7 527 65.7
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.0e-195 687.2 524 66.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.9e-195 685.3 528 64.8
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 8.6e-195 684.1 530 65.7
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 5.6e-194 681.4 538 64.9
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 5.6e-194 681.4 528 64.8
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 7.3e-194 681.0 531 65.2
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 3.6e-193 678.7 533 66.4
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 3.6e-193 678.7 539 64.7
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 8.0e-193 677.6 528 64.2
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.8e-192 676.4 527 64.9
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 4.0e-192 675.2 543 63.5
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 5.2e-192 674.9 544 64.3
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.5e-191 673.3 530 66.2
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.0e-191 672.9 557 63.6
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 7.5e-191 671.0 534 63.7
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.2e-190 669.5 523 68.3
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.9e-189 666.4 528 64.0
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.2e-188 663.7 533 63.2
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 1.1e-186 657.1 529 64.1
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 4.3e-186 655.2 521 64.7
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 2.1e-185 652.9 524 65.6
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.4e-184 650.2 523 64.6
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 1.8e-184 649.8 523 62.5
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.1e-184 649.0 523 64.2
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 6.8e-184 647.9 523 66.3
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 2.9e-182 642.5 523 63.3
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 4.9e-182 641.7 523 63.3
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 1.9e-181 639.8 532 62.6
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.4e-181 639.4 535 61.5
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 1.7e-179 633.3 584 57.0
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 8.6e-179 630.9 534 62.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 5.6e-178 628.2 523 61.4
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 4.0e-176 622.1 523 61.4
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.4e-173 611.7 505 60.6
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 3.5e-172 609.0 451 68.1
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 1.9e-170 603.2 537 58.3
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 4.3e-170 602.1 542 58.9
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.7e-169 598.6 525 60.0
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.5e-167 593.6 525 59.6
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 2.9e-166 589.3 525 59.2
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.9e-166 589.3 526 57.6
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 8.7e-163 577.8 525 58.1
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 2.5e-162 576.2 524 56.7
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.5e-159 567.0 524 56.1
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 4.5e-159 565.5 525 57.5
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 1.3e-158 563.9 439 66.1
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 2.6e-151 539.7 435 63.0
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.5e-142 508.4 395 63.8
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.3e-141 504.6 393 64.1
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 1.2e-135 487.6 395 61.0
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 2.1e-132 476.9 567 51.1
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 4.6e-132 475.7 524 47.7
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 2.3e-131 473.4 538 48.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 7.4e-122 441.8 541 45.5
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 7.4e-114 415.2 507 47.3
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 2.6e-111 406.8 355 60.6
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.0e-110 404.8 355 60.3
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 7.5e-106 388.7 552 40.8
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.1e-104 384.8 286 69.2
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.2e-100 371.3 461 43.6
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.0e-99 368.2 288 66.7
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 8.3e-89 332.0 558 37.8
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 4.1e-80 303.1 287 56.8
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 6.6e-78 295.8 389 42.7
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 3.9e-70 270.0 202 68.3
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 1.1e-67 261.9 573 33.0
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.4e-65 252.7 212 60.8
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 1.9e-61 241.1 135 88.1
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 9.6e-61 238.8 549 31.1
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 8.9e-59 232.3 160 70.6
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 1.3e-57 228.4 546 31.7
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 1.6e-55 221.5 160 68.1
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.6e-52 211.5 123 83.7
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 1.2e-47 195.3 168 55.4
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 5.3e-43 179.9 135 68.1
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.3e-40 169.1 130 65.4
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 6.7e-30 136.3 85 77.6
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.9e-29 134.8 113 61.9
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 1.3e-28 132.1 100 67.0
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 1.8e-27 128.3 152 49.3
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 1.5e-26 125.2 92 71.7
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 6.1e-23 113.2 450 25.6
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-19 102.1 128 50.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 6.9e-19 99.8 124 48.4
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 2.7e-15 87.8 84 53.6
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.8e-14 85.1 71 57.7
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 3.3e-13 80.9 71 54.9
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 3.3e-13 80.9 71 54.9
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 3.1e-11 74.3 77 49.4
arahy.Tifrunner.gnm1.ann1.QJV3PU Arachis hypogaea HOM05D003356 ORTHO05D086117 5.3e-11 73.6 128 39.8
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 6.9e-11 73.2 73 53.4
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.5e-10 70.5 267 26.6
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 2.7e-07 61.2 49 63.3
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 4.7e-07 60.5 62 51.6
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 4.7e-07 60.5 62 51.6
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 3.9e-06 57.4 271 28.0
arahy.Tifrunner.gnm1.ann1.69Z87Y Arachis hypogaea HOM05D005625 ORTHO05D007564 8.8e-06 56.2 48 68.8


User provided reference genes

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