Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 0.0e+00 1152.9 682 100.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 6.1e-286 987.3 685 80.6
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 4.8e-267 924.5 696 78.4
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.5e-255 885.6 698 75.8
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 4.9e-243 844.7 685 72.4
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 6.4e-227 791.2 603 74.0
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 4.7e-222 775.0 702 65.8
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 7.8e-217 757.7 603 71.3
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.1e-205 719.2 695 65.6
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 2.5e-199 699.5 694 63.5
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 5.6e-191 671.8 600 67.3
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.3e-187 660.6 693 60.8
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 6.1e-153 545.4 687 50.2
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.1e-141 506.5 693 49.5
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.2e-140 504.6 694 50.9
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 9.4e-138 495.0 694 49.9
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 9.4e-138 495.0 692 49.1
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 2.0e-135 487.3 717 48.3
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 3.7e-134 483.0 698 51.3
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 6.3e-134 482.3 714 46.1
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 2.4e-133 480.3 676 48.7
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 9.1e-133 478.4 686 49.3
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 3.5e-132 476.5 696 48.6
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.6e-131 472.2 695 47.5
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 9.5e-130 468.4 702 46.0
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.2e-129 468.0 694 47.8
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 3.6e-129 466.5 694 47.4
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 1.4e-128 464.5 708 46.2
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.2e-127 461.5 700 46.1
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.8e-126 456.8 696 48.7
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 2.4e-125 453.8 697 44.0
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 5.4e-125 452.6 690 46.2
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 9.2e-125 451.8 690 48.1
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 1.0e-120 438.3 750 44.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 4.0e-120 436.4 688 45.5
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 5.2e-120 436.0 690 45.8
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 4.4e-119 433.0 686 45.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.3e-118 431.4 697 45.9
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.3e-118 431.4 685 44.7
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 1.4e-117 427.9 709 44.1
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 5.4e-117 426.0 704 44.2
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 1.7e-115 421.0 697 44.2
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 3.0e-115 420.2 695 43.3
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.1e-113 414.1 733 41.1
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.8e-113 413.7 686 44.0
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 8.0e-113 412.1 714 43.3
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.0e-112 409.8 709 44.4
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 1.2e-111 408.3 693 45.3
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 4.4e-111 406.4 693 40.3
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 7.5e-111 405.6 701 47.6
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 7.5e-111 405.6 716 43.4
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 7.5e-111 405.6 692 42.5
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.9e-110 403.7 608 45.9
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.4e-109 401.4 600 44.2
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 4.1e-109 399.8 609 46.3
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.0e-107 395.2 562 48.8
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.7e-107 394.4 733 42.4
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.1e-106 391.7 592 47.6
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 1.9e-106 391.0 725 43.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 9.5e-106 388.7 591 47.7
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 8.1e-105 385.6 663 45.7
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.3e-104 384.0 729 42.2
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 5.2e-104 382.9 692 41.3
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 2.6e-103 380.6 589 47.0
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.3e-102 378.3 733 41.7
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 6.4e-102 375.9 592 46.5
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 3.2e-101 373.6 735 40.4
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 5.4e-101 372.9 242 84.7
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 9.2e-101 372.1 706 40.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.2e-100 371.7 669 42.8
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 3.0e-99 367.1 715 41.3
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 7.3e-98 362.5 573 46.6
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.1e-97 360.9 600 43.7
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 6.2e-97 359.4 551 45.9
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.4e-95 353.2 588 45.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.8e-95 352.8 686 41.3
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 2.9e-94 350.5 686 40.2
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.9e-94 349.7 686 40.7
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 5.1e-91 339.7 688 38.1
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 1.3e-89 335.1 608 41.4
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 6.2e-89 332.8 608 40.8
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.4e-88 330.9 593 42.5
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 1.3e-86 325.1 571 44.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 7.9e-84 315.8 695 42.0
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.5e-82 311.6 692 37.9
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 1.1e-80 305.4 699 38.8
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.9e-80 302.8 618 40.3
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.3e-78 298.5 688 36.9
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.9e-77 294.7 469 46.9
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 9.3e-77 292.4 669 42.2
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 1.8e-75 288.1 587 38.2
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 3.9e-75 287.0 696 36.9
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 8.7e-75 285.8 692 36.4
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.2e-71 275.4 645 35.5
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.6e-68 265.0 601 36.3
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 2.1e-68 264.6 682 37.4
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 1.8e-67 261.5 493 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 6.7e-67 259.6 625 34.4
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.9e-66 258.1 683 38.2
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.9e-66 258.1 669 36.9
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.7e-66 256.5 687 37.3
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 7.4e-66 256.1 611 36.5
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 9.6e-66 255.8 686 37.9
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.6e-65 255.0 690 37.2
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.7e-65 253.8 611 36.3
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.0e-63 248.1 452 39.2
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.6e-63 246.1 471 40.3
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 2.9e-62 244.2 356 45.5
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 9.3e-61 239.2 709 33.4
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.1e-59 233.4 606 34.5
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.2e-57 228.0 442 37.6
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 9.4e-53 212.6 326 48.5
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 2.1e-44 184.9 343 42.3
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 4.7e-44 183.7 181 55.8
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 6.3e-41 173.3 605 31.6
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-40 172.2 260 45.4
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 4.2e-37 160.6 398 39.4
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 3.3e-34 151.0 645 29.1
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 7.0e-32 143.3 248 42.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.2e-31 142.5 190 54.2
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 3.2e-29 134.4 650 28.5
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 4.0e-27 127.5 637 26.7
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.2e-25 121.7 198 43.9
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.9e-22 111.3 99 51.5
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-21 109.4 87 60.9
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 2.7e-20 104.8 638 27.4
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.0e-19 102.8 133 53.4
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 3.0e-19 101.3 129 52.7
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 4.1e-16 90.9 619 25.0
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.6e-14 83.2 137 42.3
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.2e-10 72.8 565 24.8
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 3.4e-10 71.2 134 36.6
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 3.7e-09 67.8 194 32.0


User provided reference genes

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