Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 9.1e-204 713.4 369 100.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 6.8e-175 617.5 369 87.3
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 5.2e-167 591.3 370 82.2
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 3.8e-165 585.1 370 81.4
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 4.9e-141 505.0 376 72.1
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 2.1e-139 499.6 374 72.5
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.3e-138 496.9 374 71.4
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.8e-138 496.5 373 71.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 6.7e-138 494.6 348 74.1
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-128 463.8 373 67.6
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 2.0e-126 456.4 372 65.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.9e-126 454.9 372 65.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 9.7e-113 411.0 329 68.4
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.6e-102 376.3 375 54.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 2.2e-101 373.2 370 56.5
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.5e-100 370.5 376 54.0
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.5e-100 370.5 361 55.4
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.5e-100 370.5 361 55.4
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 4.2e-100 369.0 370 54.3
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 9.4e-100 367.9 370 54.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 9.4e-100 367.9 370 54.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.6e-99 365.9 377 53.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.6e-99 365.9 374 54.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 8.8e-98 361.3 289 67.8
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 4.8e-96 355.5 357 54.1
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 8.3e-96 354.8 374 52.9
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.6e-94 350.5 376 52.4
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.0e-94 350.1 357 52.4
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 4.5e-94 349.0 368 53.3
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 5.9e-94 348.6 384 53.6
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.7e-93 347.1 376 51.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 8.5e-93 344.7 361 53.5
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.1e-92 344.4 363 52.6
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.2e-92 341.7 363 52.6
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 9.4e-92 341.3 402 49.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-91 340.9 368 51.9
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.7e-91 339.7 363 52.1
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-90 337.8 368 51.4
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.4e-90 337.4 376 51.3
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 8.8e-90 334.7 384 50.0
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-89 334.0 368 51.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 7.5e-89 331.6 378 50.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 7.5e-89 331.6 367 52.3
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 9.8e-89 331.3 376 50.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 8.3e-88 328.2 378 48.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.4e-87 326.6 374 48.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.0e-87 325.1 374 51.6
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.2e-86 324.3 385 51.4
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.6e-86 323.9 380 50.5
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.6e-86 323.9 374 48.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.7e-86 323.2 377 49.6
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 6.6e-85 318.5 343 53.4
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.6e-85 318.2 368 48.1
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.3e-84 316.2 376 48.4
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 9.5e-84 314.7 372 49.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 9.5e-84 314.7 374 47.9
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.7e-83 312.4 368 47.8
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.0e-83 311.6 329 54.4
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.0e-82 309.7 320 55.6
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.9e-82 308.1 368 47.3
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.5e-81 307.4 380 49.5
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.6e-81 306.6 370 47.6
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.7e-81 305.4 353 50.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.3e-80 302.0 367 48.2
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.1e-79 301.2 364 49.2
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.4e-79 300.8 357 49.0
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.8e-79 300.4 319 54.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.2e-78 297.7 365 48.8
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 3.5e-78 296.2 366 48.1
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 3.5e-78 296.2 361 48.2
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 4.5e-78 295.8 375 46.9
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.0e-77 294.7 353 46.5
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.3e-77 294.3 365 48.5
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.7e-77 293.9 370 46.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 6.6e-77 292.0 368 45.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.1e-76 291.2 368 45.9
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.5e-76 290.0 375 46.1
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 5.6e-76 288.9 376 46.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 4.7e-75 285.8 346 48.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 6.1e-75 285.4 355 46.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 8.0e-75 285.0 363 46.3
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.4e-74 284.3 373 47.7
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.3e-74 283.5 352 47.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.2e-74 282.3 357 46.5
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 6.8e-74 282.0 363 48.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.2e-73 281.2 311 52.1
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 7.5e-73 278.5 369 45.8
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 7.5e-73 278.5 369 45.8
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 9.8e-73 278.1 369 45.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.4e-72 275.4 361 46.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-71 273.9 379 44.3
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.9e-71 273.9 375 44.3
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-71 273.5 357 45.4
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.4e-71 273.5 370 45.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 7.0e-71 271.9 357 45.1
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 9.2e-71 271.6 367 46.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.2e-70 271.2 330 49.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 6.0e-70 268.9 353 45.6
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.3e-69 267.7 357 44.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.3e-69 266.9 352 44.6
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.3e-69 266.9 373 43.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.0e-69 266.5 378 43.4
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-68 264.2 352 44.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.5e-68 264.2 365 46.0
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.3e-68 263.1 351 45.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 4.3e-68 262.7 366 42.9
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.6e-68 262.3 374 43.6
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 7.3e-68 261.9 367 43.6
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.7e-67 259.2 346 45.1
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 8.0e-67 258.5 370 43.2
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.1e-66 258.1 357 43.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.1e-66 258.1 357 43.4
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-66 258.1 357 43.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.1e-66 258.1 355 43.4
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-66 257.7 370 41.9
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-66 257.7 370 41.9
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 6.8e-66 255.4 302 49.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.5e-65 254.2 402 41.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 5.4e-63 245.7 370 40.3
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.1e-63 245.4 341 42.5
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.6e-62 242.7 376 39.1
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 7.8e-62 241.9 345 41.4
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.4e-58 231.1 387 40.1
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 4.0e-58 229.6 322 42.2
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.6e-57 225.3 335 43.6
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 1.6e-54 217.6 344 40.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.6e-54 217.6 287 43.9
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.9e-47 194.1 327 39.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.2e-46 191.4 195 54.9
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.3e-44 183.3 277 41.5
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 7.1e-31 139.0 102 65.7
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 6.7e-29 132.5 370 31.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 3.3e-28 130.2 130 56.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-27 128.3 137 46.0
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.6e-27 127.9 131 59.5
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.0e-26 122.1 139 43.2
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 2.0e-25 120.9 396 29.8
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.8e-25 119.4 157 43.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.9e-24 116.3 126 44.4
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-23 114.8 131 43.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.6e-22 111.3 361 27.4
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.0e-22 109.4 257 33.5
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 7.9e-22 109.0 367 26.7
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.3e-21 107.5 376 27.4
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.9e-20 104.4 64 78.1
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.1e-19 100.9 198 35.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.2e-14 85.1 233 30.9
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.7e-12 76.3 131 32.8
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.5e-09 68.2 93 43.0
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.5e-07 60.8 82 36.6
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 3.2e-07 60.5 54 57.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 4.2e-07 60.1 54 61.1
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 7.2e-07 59.3 54 55.6
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-06 58.5 89 38.2
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-06 58.5 89 38.2
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-06 58.2 57 56.1
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 2.7e-06 57.4 57 54.4


User provided reference genes

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