Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.1e-196 689.9 378 100.0
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.1e-159 567.0 380 84.5
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 5.0e-96 355.5 400 64.0
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.9e-88 329.7 414 59.9
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 4.8e-59 232.6 391 50.1
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 1.7e-56 224.2 414 44.7
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 1.2e-54 218.0 445 44.9
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 3.0e-45 186.8 416 41.8
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.8e-42 177.6 408 41.2
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 2.0e-41 174.1 453 35.1
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 8.6e-40 168.7 450 36.2
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.9e-35 153.7 392 35.5
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 1.2e-30 138.3 402 35.1
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.6e-28 130.6 414 33.1
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.4e-26 124.0 466 30.5
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.6e-25 121.3 402 29.9
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 1.6e-25 121.3 390 31.5
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 3.5e-25 120.2 466 29.0
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.5e-25 120.2 428 31.5
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.7e-24 117.9 386 31.9
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 5.1e-24 116.3 439 33.0
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 6.6e-24 115.9 390 33.3
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 8.6e-24 115.5 427 29.7
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 5.6e-23 112.8 379 31.7
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 7.3e-23 112.5 415 30.6
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 2.8e-22 110.5 379 30.9
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.6e-22 110.2 406 31.8
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 4.7e-22 109.8 443 32.5
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.7e-22 109.8 443 32.7
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 4.7e-22 109.8 463 29.6
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 6.2e-22 109.4 456 30.0
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 8.1e-22 109.0 457 30.0
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 8.1e-22 109.0 445 30.1
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 8.1e-22 109.0 460 30.4
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.8e-21 107.8 423 28.1
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 1.8e-21 107.8 386 31.1
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 6.8e-21 105.9 150 46.7
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.8e-21 105.9 458 29.0
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 8.9e-21 105.5 325 30.8
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 8.9e-21 105.5 427 30.4
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.6e-20 104.0 429 29.6
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.4e-20 103.6 397 28.5
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 3.4e-20 103.6 403 28.0
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 7.6e-20 102.4 399 29.3
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-19 101.3 399 28.3
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 2.2e-19 100.9 398 28.4
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-19 100.5 414 27.5
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 2.9e-19 100.5 399 28.6
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 2.9e-19 100.5 425 28.5
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.9e-19 100.5 446 30.3
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 3.8e-19 100.1 422 28.2
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 4.9e-19 99.8 467 29.8
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 6.4e-19 99.4 394 27.7
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 8.4e-19 99.0 431 29.2
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-18 98.6 417 28.8
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 1.1e-18 98.6 447 31.8
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.4e-18 98.2 424 28.8
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 1.9e-18 97.8 398 28.9
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 2.4e-18 97.4 472 29.4
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 2.4e-18 97.4 248 35.1
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 3.2e-18 97.1 433 28.4
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.2e-18 97.1 369 28.7
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.1e-18 96.7 418 28.7
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 4.1e-18 96.7 439 28.5
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.2e-17 95.1 433 28.9
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-17 94.7 411 27.7
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-17 94.7 411 27.7
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 1.6e-17 94.7 472 29.2
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.1e-17 94.4 479 27.8
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.7e-17 94.0 433 31.9
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 6.0e-17 92.8 422 28.7
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 7.8e-17 92.4 430 27.9
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.0e-16 92.0 376 30.9
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.3e-16 91.7 378 29.1
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.3e-16 91.7 192 37.5
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.3e-16 91.7 492 28.0
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 2.3e-16 90.9 383 29.2
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 2.3e-16 90.9 398 28.6
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 2.3e-16 90.9 383 29.2
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 3.9e-16 90.1 380 31.1
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 5.1e-16 89.7 272 34.6
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 5.1e-16 89.7 376 26.1
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 6.6e-16 89.4 434 29.7
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 8.7e-16 89.0 184 37.0
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-15 87.4 415 28.7
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 5.6e-15 86.3 407 29.7
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 7.3e-15 85.9 360 27.5
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 7.3e-15 85.9 508 26.6
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 9.6e-15 85.5 366 28.4
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 9.6e-15 85.5 434 28.3
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 9.6e-15 85.5 466 27.0
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.2e-14 85.1 499 26.7
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.6e-14 84.7 409 28.6
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.1e-14 84.3 426 29.3
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 2.8e-14 84.0 496 26.8
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 2.8e-14 84.0 359 27.6
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.8e-14 84.0 418 29.2
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 3.6e-14 83.6 58 70.7
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.6e-14 83.6 373 26.3
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.7e-14 83.2 359 27.3
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.7e-14 83.2 359 27.3
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-13 81.6 362 27.6
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.8e-13 81.3 57 71.9
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-13 80.9 398 28.1
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-13 80.9 398 28.1
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-13 80.5 364 28.3
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 3.1e-13 80.5 380 29.7
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 3.1e-13 80.5 188 37.2
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 3.1e-13 80.5 413 29.1
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.1e-13 80.5 378 27.0
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 4.0e-13 80.1 436 29.4
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 6.9e-13 79.3 362 27.9
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.2e-12 78.6 481 26.8
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.2e-12 78.6 164 38.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-12 77.8 362 27.6
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 2.6e-12 77.4 453 24.7
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 2.6e-12 77.4 60 60.0
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 3.4e-12 77.0 194 35.1
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 7.6e-12 75.9 468 25.2
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 7.6e-12 75.9 387 29.7
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 9.9e-12 75.5 397 29.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.3e-11 75.1 59 69.5
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 1.7e-11 74.7 167 37.7
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 1.7e-11 74.7 465 24.5
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.2e-11 74.3 66 60.6
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.2e-11 74.3 370 27.8
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.2e-11 74.3 402 30.8
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.9e-11 73.9 162 35.2
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 2.9e-11 73.9 398 27.4
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.8e-11 73.6 177 34.5
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 6.4e-11 72.8 340 28.5
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.4e-11 72.8 369 27.6
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 8.4e-11 72.4 362 27.9
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 1.4e-10 71.6 357 27.5
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 3.2e-10 70.5 150 40.0
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 3.2e-10 70.5 370 26.5
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 4.2e-10 70.1 285 28.8
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 4.2e-10 70.1 388 26.0
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 5.4e-10 69.7 308 29.5
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 7.1e-10 69.3 479 25.7
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 7.1e-10 69.3 407 29.7
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 7.1e-10 69.3 351 29.1
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.5e-09 67.0 326 30.7
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 3.5e-09 67.0 434 26.5
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.0e-09 66.2 163 34.4
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 5.1e-08 63.2 370 28.1
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 5.1e-08 63.2 434 27.2
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 8.7e-08 62.4 365 27.1
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 1.1e-07 62.0 65 56.9
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-07 61.2 57 52.6
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-07 60.8 348 27.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.3e-07 60.5 454 26.0
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 2.8e-06 57.4 396 23.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 6.2e-06 56.2 157 32.5


User provided reference genes

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