Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.8e-45 184.1 92 100.0
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 1.0e-23 113.2 86 68.6
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.6e-16 89.4 65 56.9
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 2.8e-16 88.6 100 49.0
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.7e-16 87.8 60 71.7
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 6.1e-16 87.4 63 54.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.1e-16 87.4 63 60.3
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 1.0e-15 86.7 92 48.9
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.0e-15 86.7 65 55.4
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.8e-15 85.9 83 53.0
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 2.3e-15 85.5 65 56.9
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 2.3e-15 85.5 79 54.4
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 2.3e-15 85.5 60 58.3
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 2.3e-15 85.5 64 54.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 4.0e-15 84.7 65 56.9
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.0e-15 84.7 64 54.7
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 5.2e-15 84.3 64 54.7
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 5.2e-15 84.3 64 54.7
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 5.2e-15 84.3 65 53.8
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.2e-15 84.3 65 52.3
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 5.2e-15 84.3 65 53.8
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.8e-15 84.0 64 54.7
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 6.8e-15 84.0 64 57.8
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.8e-15 84.0 65 52.3
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 6.8e-15 84.0 83 49.4
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 6.8e-15 84.0 65 53.8
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 6.8e-15 84.0 64 51.6
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 8.8e-15 83.6 65 50.8
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 8.8e-15 83.6 65 52.3
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 8.8e-15 83.6 86 45.3
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 8.8e-15 83.6 61 59.0
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.2e-14 83.2 84 47.6
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 1.2e-14 83.2 65 52.3
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 1.2e-14 83.2 65 52.3
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-14 83.2 94 47.9
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.2e-14 83.2 94 47.9
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.2e-14 83.2 65 53.8
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.5e-14 82.8 64 53.1
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.5e-14 82.8 61 55.7
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 2.0e-14 82.4 62 53.2
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 2.0e-14 82.4 62 53.2
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.0e-14 82.4 65 52.3
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 2.0e-14 82.4 89 48.3
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.6e-14 82.0 64 53.1
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.6e-14 82.0 64 53.1
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 2.6e-14 82.0 65 52.3
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 2.6e-14 82.0 62 53.2
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 2.6e-14 82.0 100 47.0
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 3.4e-14 81.6 65 50.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 3.4e-14 81.6 65 52.3
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 3.4e-14 81.6 65 49.2
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.4e-14 81.6 85 44.7
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.4e-14 81.6 65 50.8
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.4e-14 81.6 99 41.4
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 4.4e-14 81.3 65 50.8
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 4.4e-14 81.3 100 41.0
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.4e-14 81.3 65 50.8
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 4.4e-14 81.3 94 47.9
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 4.4e-14 81.3 65 52.3
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 4.4e-14 81.3 66 53.0
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 5.7e-14 80.9 99 44.4
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 5.7e-14 80.9 79 46.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 7.5e-14 80.5 65 49.2
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 7.5e-14 80.5 63 52.4
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 7.5e-14 80.5 95 43.2
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 7.5e-14 80.5 60 56.7
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 7.5e-14 80.5 61 52.5
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.5e-14 80.5 64 50.0
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.8e-14 80.1 65 50.8
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 9.8e-14 80.1 70 48.6
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.3e-13 79.7 99 41.4
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-13 79.7 85 43.5
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.3e-13 79.7 106 42.5
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.3e-13 79.7 61 54.1
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.3e-13 79.7 65 52.3
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.7e-13 79.3 65 50.8
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.7e-13 79.3 65 52.3
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.7e-13 79.3 93 47.3
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.7e-13 79.3 65 49.2
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.7e-13 79.3 101 39.6
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 1.7e-13 79.3 61 54.1
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.7e-13 79.3 59 57.6
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.2e-13 79.0 65 49.2
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 2.2e-13 79.0 96 45.8
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.8e-13 78.6 85 43.5
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 2.8e-13 78.6 63 47.6
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.8e-13 78.6 99 40.4
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.8e-13 78.6 99 40.4
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 3.7e-13 78.2 102 38.2
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 3.7e-13 78.2 66 51.5
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 4.9e-13 77.8 64 48.4
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 4.9e-13 77.8 100 41.0
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 4.9e-13 77.8 58 55.2
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 6.3e-13 77.4 61 52.5
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.3e-13 77.4 58 55.2
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 8.3e-13 77.0 104 38.5
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 8.3e-13 77.0 65 49.2
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.1e-12 76.6 64 46.9
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.1e-12 76.6 92 43.5
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.4e-12 76.3 63 47.6
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.8e-12 75.9 92 45.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 2.4e-12 75.5 104 39.4
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 2.4e-12 75.5 98 41.8
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 2.4e-12 75.5 77 45.5
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 3.1e-12 75.1 89 44.9
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 4.1e-12 74.7 101 37.6
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 4.1e-12 74.7 65 46.2
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.4e-12 74.3 85 41.2
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 5.4e-12 74.3 88 43.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.4e-12 74.3 100 39.0
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 7.0e-12 73.9 61 49.2
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.2e-11 73.2 92 44.6
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.6e-11 72.8 60 53.3
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 2.7e-11 72.0 82 48.8
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 2.7e-11 72.0 89 42.7
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.7e-11 72.0 98 38.8
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 5.9e-11 70.9 96 35.4
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.0e-10 70.1 102 35.3
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 1.0e-10 70.1 50 54.0
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.3e-10 69.7 89 37.1
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.7e-10 69.3 50 56.0
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 2.3e-10 68.9 68 47.1
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 2.3e-10 68.9 50 52.0
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.8e-10 68.2 58 48.3
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 3.8e-10 68.2 82 45.1
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.5e-09 66.2 64 48.4
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 2.5e-09 65.5 67 40.3
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.3e-09 64.7 69 40.6
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.6e-09 64.3 54 50.0
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 5.6e-09 64.3 90 41.1
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 5.6e-09 64.3 64 40.6
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.6e-08 62.8 51 52.9
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 3.6e-08 61.6 73 41.1
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 3.6e-08 61.6 58 43.1
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 8.0e-08 60.5 105 38.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.0e-08 60.5 46 54.3
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 2.3e-07 58.9 95 36.8
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 2.3e-07 58.9 65 43.1
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 4.0e-07 58.2 42 59.5
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 5.2e-07 57.8 40 60.0


User provided reference genes

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