Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.3e-38 162.5 80 100.0
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 6.3e-17 90.5 60 71.7
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 1.1e-16 89.7 67 71.6
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.5e-13 78.6 75 56.0
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.0e-11 71.6 67 59.7
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 3.3e-10 68.2 75 52.0
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 7.5e-10 67.0 81 48.1
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 7.5e-10 67.0 68 52.9
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 9.7e-10 66.6 88 50.0
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 2.8e-09 65.1 87 46.0
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 2.8e-09 65.1 76 50.0
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 2.8e-09 65.1 87 46.0
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.8e-09 65.1 87 46.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 3.7e-09 64.7 87 46.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 3.7e-09 64.7 87 46.0
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 4.8e-09 64.3 79 46.8
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.8e-09 64.3 81 53.1
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 6.3e-09 63.9 83 45.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 6.3e-09 63.9 76 50.0
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 6.3e-09 63.9 76 50.0
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.3e-09 63.9 35 71.4
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 6.3e-09 63.9 37 67.6
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 8.2e-09 63.5 87 44.8
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 8.2e-09 63.5 76 50.0
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 8.2e-09 63.5 71 47.9
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 8.2e-09 63.5 89 42.7
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.1e-08 63.2 87 46.0
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.1e-08 63.2 92 40.2
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 1.1e-08 63.2 41 58.5
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.4e-08 62.8 52 55.8
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.4e-08 62.8 94 43.6
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 1.4e-08 62.8 34 73.5
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.4e-08 62.8 36 66.7
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.8e-08 62.4 37 70.3
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 1.8e-08 62.4 93 41.9
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.8e-08 62.4 87 43.7
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 1.8e-08 62.4 66 48.5
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 2.4e-08 62.0 87 44.8
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.1e-08 61.6 87 41.4
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 3.1e-08 61.6 84 46.4
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 4.1e-08 61.2 92 44.6
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 4.1e-08 61.2 86 44.2
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 4.1e-08 61.2 34 73.5
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 4.1e-08 61.2 76 48.7
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 4.1e-08 61.2 69 46.4
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 5.3e-08 60.8 88 44.3
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 5.3e-08 60.8 87 40.2
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.3e-08 60.8 92 40.2
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 5.3e-08 60.8 87 41.4
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 5.3e-08 60.8 88 43.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.3e-08 60.8 89 43.8
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 7.0e-08 60.5 82 41.5
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 7.0e-08 60.5 90 41.1
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.0e-08 60.5 81 45.7
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 9.1e-08 60.1 86 43.0
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 1.2e-07 59.7 81 45.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.2e-07 59.7 87 41.4
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.2e-07 59.7 36 63.9
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.6e-07 59.3 84 45.2
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.6e-07 59.3 35 68.6
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.0e-07 58.9 91 45.1
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 2.0e-07 58.9 89 42.7
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.0e-07 58.9 86 39.5
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.0e-07 58.9 86 40.7
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 2.0e-07 58.9 86 41.9
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 2.0e-07 58.9 90 41.1
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 2.0e-07 58.9 92 44.6
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 2.7e-07 58.5 35 65.7
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 2.7e-07 58.5 81 43.2
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 2.7e-07 58.5 38 60.5
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.7e-07 58.5 86 43.0
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 3.5e-07 58.2 91 41.8
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 3.5e-07 58.2 80 42.5
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 3.5e-07 58.2 101 38.6
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.5e-07 58.2 37 64.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.5e-07 58.2 80 40.0
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 3.5e-07 58.2 89 39.3
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 3.5e-07 58.2 76 47.4
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 3.5e-07 58.2 87 39.1
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 3.5e-07 58.2 87 40.2
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 3.5e-07 58.2 86 43.0
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.5e-07 57.8 89 43.8
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 5.9e-07 57.4 64 48.4
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 5.9e-07 57.4 89 42.7
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 5.9e-07 57.4 37 62.2
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.9e-07 57.4 83 39.8
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 5.9e-07 57.4 82 45.1
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 5.9e-07 57.4 66 45.5
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 5.9e-07 57.4 88 43.2
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.7e-07 57.0 81 42.0
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 7.7e-07 57.0 84 46.4
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 7.7e-07 57.0 86 41.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.7e-07 57.0 76 44.7
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 1.0e-06 56.6 84 42.9
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 1.0e-06 56.6 91 41.8
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.0e-06 56.6 41 61.0
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.3e-06 56.2 78 46.2
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 1.3e-06 56.2 58 44.8
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 1.3e-06 56.2 66 45.5
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 1.3e-06 56.2 77 44.2
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.3e-06 56.2 87 39.1
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 1.7e-06 55.8 88 39.8
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.7e-06 55.8 92 40.2
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.7e-06 55.8 86 39.5
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 1.7e-06 55.8 89 38.2
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 2.2e-06 55.5 87 37.9
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 2.2e-06 55.5 83 42.2
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 2.2e-06 55.5 84 39.3
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.2e-06 55.5 78 48.7
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 2.2e-06 55.5 88 42.0
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.2e-06 55.5 95 35.8
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 2.9e-06 55.1 34 61.8
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 2.9e-06 55.1 90 40.0
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 3.8e-06 54.7 57 45.6
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 3.8e-06 54.7 82 45.1
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 5.0e-06 54.3 36 55.6
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 5.0e-06 54.3 42 57.1
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 6.5e-06 53.9 61 45.9
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 6.5e-06 53.9 29 72.4
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 6.5e-06 53.9 29 72.4
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 8.5e-06 53.5 88 40.9
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.5e-06 53.5 85 41.2


User provided reference genes

Program Settings