Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G123300 Phaseolus vulgaris HOM05D006189 ORTHO05D007765 2.9e-160 568.5 291 100.0
VMungo0540G1817 Vigna mungo HOM05D006189 ORTHO05D007765 7.6e-153 543.9 293 95.2
Glyma.15G135500 Glycine max HOM05D006189 ORTHO05D007765 9.0e-146 520.4 290 91.4
Lj6g0027485 Lotus japonicus HOM05D006189 ORTHO05D007765 4.6e-134 481.5 287 85.0
Ca_00927_v3 Cicer arietinum L. HOM05D006189 ORTHO05D007765 7.4e-132 474.2 292 83.2
TPR.G8020 Trifolium pratense HOM05D006189 ORTHO05D007765 9.6e-132 473.8 279 84.6
Lalb_Chr18g0058331 Lupinus albus HOM05D006189 ORTHO05D007765 8.1e-131 470.7 283 84.5
Medtr2g031990 Medicago truncatula HOM05D006189 ORTHO05D007765 3.1e-130 468.8 281 84.3
arahy.Tifrunner.gnm1.ann1.HZ123V Arachis hypogaea HOM05D006189 ORTHO05D007765 5.1e-125 451.4 287 79.1
Glyma.09G029700 Glycine max HOM05D006189 ORTHO05D007765 7.4e-124 447.6 240 91.2
arahy.Tifrunner.gnm1.ann1.4Q5DUA Arachis hypogaea HOM05D006189 ORTHO05D007765 9.6e-124 447.2 286 79.0
CiPaw.09G147800 Carya illinoinensis HOM05D006189 ORTHO05D007765 4.9e-120 434.9 281 78.3
Potri.011G157300 Populus trichocarpa HOM05D006189 ORTHO05D007765 3.2e-119 432.2 288 76.0
Manes.14G126200 Manihot esculenta HOM05D006189 ORTHO05D007765 1.6e-118 429.9 282 75.5
QL04p073052 Quercus lobata HOM05D006189 ORTHO05D007765 2.1e-118 429.5 287 75.3
CSS0031891 Camellia sinensis var. sinensis HOM05D006189 ORTHO05D007765 2.7e-118 429.1 257 81.3
Thecc.06G008600 Theobroma cacao HOM05D006189 ORTHO05D007765 2.7e-118 429.1 288 75.7
Duzib235G1073 Durio zibethinus HOM05D006189 ORTHO05D007765 1.0e-117 427.2 273 76.9
COL.COLO4_26883 Corchorus olitorius HOM05D006189 ORTHO05D007765 1.3e-117 426.8 288 75.3
Haze_05946 Corylus avellana HOM05D006189 ORTHO05D007765 2.3e-117 426.0 257 80.2
Rhsim13G0125300 Rhododendron simsii HOM05D006189 ORTHO05D007765 3.9e-117 425.2 296 73.3
Cfa000769 Carpinus fangiana HOM05D006189 ORTHO05D007765 5.1e-117 424.9 281 75.8
Atru.chr10.686 Acer truncatum HOM05D006189 ORTHO05D007765 8.7e-117 424.1 287 74.6
GSVIVG01021771001 Vitis vinifera HOM05D006189 ORTHO05D007765 1.5e-116 423.3 275 76.7
Actinidia29243 Actinidia chinensis HOM05D006189 ORTHO05D007765 1.9e-116 422.9 257 79.8
vmacro03465 Vaccinium macrocarpon HOM05D006189 ORTHO05D007765 2.5e-116 422.5 297 73.4
Gohir.D02G105200 Gossypium hirsutum HOM05D006189 ORTHO05D007765 5.7e-116 421.4 277 75.5
TAR626G0344 Trochodendron aralioides HOM05D006189 ORTHO05D007765 5.7e-116 421.4 257 79.0
DCAR_005641 Daucus carota HOM05D006189 ORTHO05D007765 1.3e-115 420.2 266 76.7
Prupe.4G101000 Prunus persica HOM05D006189 ORTHO05D007765 1.6e-115 419.9 287 75.3
MBI18_g27139_MAGBIO Magnolia biondii HOM05D006189 ORTHO05D007765 4.8e-115 418.3 276 75.0
Dinv06442 Davidia involucrata HOM05D006189 ORTHO05D007765 8.2e-115 417.5 279 76.3
PSO541G1785 Papaver somniferum HOM05D006189 ORTHO05D007765 4.1e-114 415.2 282 73.4
Gorai.005G119400 Gossypium raimondii HOM05D006189 ORTHO05D007765 9.0e-114 414.1 277 74.0
Ciclev10016184m.g Citrus clementina HOM05D006189 ORTHO05D007765 1.2e-113 413.7 281 75.4
PSO675G7004 Papaver somniferum HOM05D006189 ORTHO05D007765 1.5e-113 413.3 263 76.4
CAN.G565.1 Capsicum annuum HOM05D006189 ORTHO05D007765 5.9e-113 411.4 257 75.9
Sed0000978 Sechium edule HOM05D006189 ORTHO05D007765 1.0e-112 410.6 275 74.9
TWI38G1238 Tripterygium wilfordii HOM05D006189 ORTHO05D007765 1.0e-112 410.6 275 74.2
Cc09_g07340 Coffea canephora HOM05D006189 ORTHO05D007765 1.3e-112 410.2 276 72.5
MD10G1243100 Malus domestica HOM05D006189 ORTHO05D007765 1.7e-112 409.8 288 73.6
ECA234G0756 Erigeron canadensis HOM05D006189 ORTHO05D007765 2.2e-112 409.5 253 78.7
MELO3C002872.2 Cucumis melo HOM05D006189 ORTHO05D007765 6.5e-112 407.9 289 71.3
PGSC0003DMG400028033 Solanum tuberosum HOM05D006189 ORTHO05D007765 6.5e-112 407.9 257 75.9
FAN21G1916 Fragaria x ananassa HOM05D006189 ORTHO05D007765 1.4e-111 406.8 287 72.5
SalBow8G0058 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.9e-111 406.4 268 73.5
SalBow8G0354 Salvia bowleyana HOM05D006189 ORTHO05D007765 1.9e-111 406.4 268 73.5
Migut.M01928 Erythranthe guttata HOM05D006189 ORTHO05D007765 2.5e-111 406.0 293 70.0
Eucgr.D01017 Eucalyptus grandis HOM05D006189 ORTHO05D007765 3.2e-111 405.6 257 75.9
RcHm_v2.0_Chr5g0018051 Rosa chinensis HOM05D006189 ORTHO05D007765 4.2e-111 405.2 287 72.5
Sabra11G0142800 Salix brachista HOM05D006189 ORTHO05D007765 5.5e-111 404.8 353 61.8
Oeu063153.2 Olea europaea HOM05D006189 ORTHO05D007765 7.2e-111 404.4 279 70.6
FvH4_3g11150 Fragaria vesca HOM05D006189 ORTHO05D007765 9.4e-111 404.1 287 72.5
Nitab4.5_0002819g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 2.1e-110 402.9 276 72.1
Nitab4.5_0010673g0010 Nicotiana tabacum HOM05D006189 ORTHO05D007765 3.6e-110 402.1 276 71.7
FAN16G1953 Fragaria x ananassa HOM05D006189 ORTHO05D007765 4.6e-110 401.7 287 71.8
HanXRQChr10g0296271 Helianthus annuus HOM05D006189 ORTHO05D007765 4.6e-110 401.7 267 73.4
Aa31LG6G2850 Aethionema arabicum HOM05D006189 ORTHO05D007765 7.9e-110 401.0 263 73.4
BcaNung04155 Brassica carinata HOM05D006189 ORTHO05D007765 7.9e-110 401.0 278 71.9
ClCG03G008560 Citrullus lanatus HOM05D006189 ORTHO05D007765 7.9e-110 401.0 289 69.6
BraA01t01159Z Brassica rapa HOM05D006189 ORTHO05D007765 3.9e-109 398.7 285 69.8
BolC1t01404H Brassica oleracea HOM05D006189 ORTHO05D007765 6.7e-109 397.9 278 71.6
Solyc02g023990.3 Solanum lycopersicum HOM05D006189 ORTHO05D007765 6.7e-109 397.9 257 74.3
C01p14490 Brassica napus HOM05D006189 ORTHO05D007765 8.8e-109 397.5 278 71.6
Sopen02g006700 Solanum pennellii HOM05D006189 ORTHO05D007765 1.1e-108 397.1 257 73.9
BcaC09g51315 Brassica carinata HOM05D006189 ORTHO05D007765 2.0e-108 396.4 278 71.2
A01p12170 Brassica napus HOM05D006189 ORTHO05D007765 2.0e-108 396.4 285 69.5
FAN25G1707 Fragaria x ananassa HOM05D006189 ORTHO05D007765 2.5e-108 396.0 272 73.5
Sp7g18830 Schrenkiella parvula HOM05D006189 ORTHO05D007765 2.5e-108 396.0 285 70.5
Sc24g0002570 Simmondsia chinensis HOM05D006189 ORTHO05D007765 2.5e-108 396.0 293 68.3
Carub.0007s2069 Capsella rubella HOM05D006189 ORTHO05D007765 7.4e-108 394.4 283 68.9
Lsat_1_v5_gn_5_148401 Lactuca sativa HOM05D006189 ORTHO05D007765 7.4e-108 394.4 274 70.8
AL7G33390 Arabidopsis lyrata HOM05D006189 ORTHO05D007765 1.7e-107 393.3 277 70.0
AT4G20760 Arabidopsis thaliana HOM05D006189 ORTHO05D007765 1.7e-107 393.3 283 69.3
MSTRG.16306 Avicennia marina HOM05D006189 ORTHO05D007765 2.2e-107 392.9 256 72.7
Thhalv10025851m.g Eutrema salsugineum HOM05D006189 ORTHO05D007765 2.8e-107 392.5 286 69.6
EL10Ac9g22332 Beta vulgaris HOM05D006189 ORTHO05D007765 1.4e-106 390.2 273 70.7
Gohir.A03G088500 Gossypium hirsutum HOM05D006189 ORTHO05D007765 1.4e-106 390.2 263 74.5
Nn7g37778 Nelumbo nucifera HOM05D006189 ORTHO05D007765 6.9e-106 387.9 284 68.7
arahy.Tifrunner.gnm1.ann1.5RXD5Y Arachis hypogaea HOM05D006189 ORTHO05D007765 3.8e-104 382.1 266 72.6
Os12g0609500 Oryza sativa ssp. japonica HOM05D006189 ORTHO05D007765 4.2e-103 378.6 267 71.2
Cpa.g.c30210.1 Carica papaya HOM05D006189 ORTHO05D007765 5.5e-103 378.3 240 76.7
CANSAT35G1316 Cannabis sativa HOM05D006189 ORTHO05D007765 9.4e-103 377.5 289 68.2
ATR0763G139 Amborella trichopoda HOM05D006189 ORTHO05D007765 4.7e-102 375.2 243 74.1
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.4e-101 373.6 260 70.8
CDE02G4463 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 5.1e-101 371.7 272 69.9
Hma1.2p1_1192F.1_g265520 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 1.3e-99 367.1 233 78.5
SEGI_07893 Sequoiadendron giganteum HOM05D006189 ORTHO05D007765 1.7e-99 366.7 272 65.4
Hund17667 Selenicereus undatus HOM05D006189 ORTHO05D007765 8.2e-99 364.4 281 66.5
AUR62027598 Chenopodium quinoa HOM05D006189 ORTHO05D007765 1.5e-97 360.1 240 72.1
AUR62030247 Chenopodium quinoa HOM05D006189 ORTHO05D007765 1.5e-97 360.1 240 71.7
CsaV3_1G037630 Cucumis sativus L. HOM05D006189 ORTHO05D007765 5.5e-95 351.7 279 67.0
AagrBONN_evm.TU.Sc2ySwM_228.1434 Anthoceros agrestis HOM05D006189 ORTHO05D007765 8.0e-94 347.8 256 64.1
Ah.14g085060 Amaranthus hybridus HOM05D006189 ORTHO05D007765 1.8e-93 346.7 255 67.1
Mapoly0158s0008 Marchantia polymorpha HOM05D006189 ORTHO05D007765 7.0e-90 334.7 255 60.8
Psat1g164320 Pisum sativum HOM05D006189 ORTHO05D007765 2.6e-89 332.8 190 85.8
Lj2A337T31 Lonicera japonica HOM05D006189 ORTHO05D007765 4.5e-89 332.0 283 62.2
Pp3c10_7720 Physcomitrium patens HOM05D006189 ORTHO05D007765 2.5e-87 326.2 257 62.3
SMO116G0118 Selaginella moellendorffii HOM05D006189 ORTHO05D007765 2.5e-87 326.2 274 56.9
PSO541G6221 Papaver somniferum HOM05D006189 ORTHO05D007765 4.2e-87 325.5 225 72.9
TPR.G21393 Trifolium pratense HOM05D006189 ORTHO05D007765 5.2e-85 318.5 188 83.5
arahy.Tifrunner.gnm1.ann1.FHXA43 Arachis hypogaea HOM05D006189 ORTHO05D007765 6.3e-75 285.0 292 54.1
Aqoxy1G01513 Aquilegia oxysepala HOM05D006189 ORTHO05D007765 1.1e-74 284.3 265 58.1
Peaxi162Scf00395g00112 Petunia axillaris HOM05D006189 ORTHO05D007765 6.1e-70 268.5 269 53.9
CARHR227300 Cardamine hirsuta HOM05D006189 ORTHO05D007765 1.8e-69 266.9 158 79.1
HPP92_015693 Vanilla planifolia HOM05D006189 ORTHO05D007765 2.7e-65 253.1 146 80.8
Zm00001eb031410 Zea mays HOM05D006189 ORTHO05D007765 8.6e-64 248.1 192 66.1
Hma1.2p1_1192F.1_g265540 Hydrangea macrophylla HOM05D006189 ORTHO05D007765 5.8e-60 235.3 130 83.1
MCO04G545 Micromonas commoda HOM05D006189 ORTHO05D007765 1.7e-59 233.8 254 46.5
PRCOL_00006144 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 3.2e-50 203.0 262 42.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 1.2e-49 201.1 128 77.3
unitig_92.g28182 Utricularia gibba HOM05D006189 ORTHO05D007765 5.2e-45 185.7 193 56.5
TPR.G8023 Trifolium pratense HOM05D006189 ORTHO05D007765 3.2e-34 149.8 109 73.4
HPP92_015692 Vanilla planifolia HOM05D006189 ORTHO05D007765 1.0e-32 144.8 116 62.9
MCO09G279 Micromonas commoda HOM05D006189 ORTHO05D007765 5.6e-23 112.5 215 34.4
MCO08G164 Micromonas commoda HOM05D006189 ORTHO05D007765 8.4e-19 98.6 276 28.6
PRCOL_00004206 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 7.1e-18 95.5 310 27.1
PRCOL_00006510 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 1.8e-16 90.9 272 28.7
QL04p073045 Quercus lobata HOM05D006189 ORTHO05D007765 2.5e-15 87.0 51 82.4
Cre12.g549852 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 7.4e-15 85.5 278 28.8
MCO03G468 Micromonas commoda HOM05D006189 ORTHO05D007765 9.6e-15 85.1 249 28.9
Cre16.g675450 Chlamydomonas reinhardtii HOM05D006189 ORTHO05D007765 1.3e-14 84.7 273 27.8
MCO02G010 Micromonas commoda HOM05D006189 ORTHO05D007765 2.1e-14 84.0 270 26.3
Cfa026914 Carpinus fangiana HOM05D000326 ORTHO05D125651 7.6e-12 75.5 262 28.2
CANSAT01G3180 Cannabis sativa HOM05D002673 ORTHO05D002766 1.9e-10 70.9 216 29.2
SpUn1298_0010 Schrenkiella parvula HOM05D006189 ORTHO05D371427 1.9e-10 70.9 196 27.0
CDE02G4223 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.2e-10 70.1 52 59.6
MSTRG.20810 Avicennia marina HOM05D000402 ORTHO05D000263 6.0e-09 65.9 237 26.6
ECA248G1442 Erigeron canadensis HOM05D001208 ORTHO05D001593 1.0e-08 65.1 234 26.5
Cfa027186 Carpinus fangiana HOM05D001208 ORTHO05D002766 1.3e-08 64.7 217 26.3
unitig_46.g18437 Utricularia gibba HOM05D001208 ORTHO05D001593 1.3e-08 64.7 271 28.8
Cfa026333 Carpinus fangiana HOM05D006189 ORTHO05D007765 1.8e-08 64.3 267 24.3
PRCOL_00002389 Prasinoderma coloniale HOM05D006189 ORTHO05D007765 5.1e-08 62.8 220 25.9
Oeu009058.1 Olea europaea HOM05D000182 ORTHO05D000112 6.7e-08 62.4 234 26.1
Cfa021708 Carpinus fangiana HOM05D002611 ORTHO05D121344 8.7e-08 62.0 215 27.9
Potri.007G007300 Populus trichocarpa HOM05D002673 ORTHO05D002766 8.7e-08 62.0 257 23.7
TAR624G0409 Trochodendron aralioides HOM05D000252 ORTHO05D003750 1.1e-07 61.6 216 27.8
MD11G1171900 Malus domestica HOM05D000182 ORTHO05D000112 1.9e-07 60.8 212 27.4
Nitab4.5_0005305g0020 Nicotiana tabacum HOM05D002673 ORTHO05D002766 1.9e-07 60.8 246 25.2
TAR624G0537 Trochodendron aralioides HOM05D000252 ORTHO05D003750 1.9e-07 60.8 216 27.8
HanXRQChr12g0377421 Helianthus annuus HOM05D000182 ORTHO05D000112 4.3e-07 59.7 195 27.7
Pp3c11_11400 Physcomitrium patens HOM05D000402 ORTHO05D000263 4.3e-07 59.7 279 25.1
Actinidia17962 Actinidia chinensis HOM05D001208 ORTHO05D001593 5.7e-07 59.3 219 28.8
Cfa001620 Carpinus fangiana HOM05D000182 ORTHO05D122240 5.7e-07 59.3 241 27.8
Cfa025005 Carpinus fangiana HOM05D044859 ORTHO05D002113 5.7e-07 59.3 217 25.3
Actinidia13135 Actinidia chinensis HOM05D000252 ORTHO05D000307 7.4e-07 58.9 223 27.4
CiPaw.13G088400 Carya illinoinensis HOM05D000326 ORTHO05D000312 7.4e-07 58.9 213 27.7
CiPaw.13G088500 Carya illinoinensis HOM05D000326 ORTHO05D000312 7.4e-07 58.9 223 27.8
PSO675G3462 Papaver somniferum HOM05D001208 ORTHO05D001593 7.4e-07 58.9 278 25.5
CiPaw.13G088600 Carya illinoinensis HOM05D000326 ORTHO05D000312 9.6e-07 58.5 214 28.0
Eucgr.C04389 Eucalyptus grandis HOM05D000182 ORTHO05D000112 9.6e-07 58.5 216 25.0
SalBow6G2971 Salvia bowleyana HOM05D001208 ORTHO05D001593 9.6e-07 58.5 226 24.3
CSS0030863 Camellia sinensis var. sinensis HOM05D002673 ORTHO05D002766 1.3e-06 58.2 208 28.4
Cc07_g07370 Coffea canephora HOM05D002673 ORTHO05D002766 1.3e-06 58.2 218 26.1
Manes.12G117700 Manihot esculenta HOM05D002673 ORTHO05D002766 1.3e-06 58.2 209 24.9
CDE02G4483 Ceratophyllum demersum HOM05D000182 ORTHO05D000112 1.6e-06 57.8 209 25.8
Duzib093G0617 Durio zibethinus HOM05D000182 ORTHO05D000112 1.6e-06 57.8 232 28.4
PGR142G4189 Punica granatum HOM05D000326 ORTHO05D000312 1.6e-06 57.8 212 27.8
arahy.Tifrunner.gnm1.ann1.HRGR9P Arachis hypogaea HOM05D000402 ORTHO05D000263 2.1e-06 57.4 220 25.0
HanXRQChr01g0008601 Helianthus annuus HOM05D001208 ORTHO05D001593 2.1e-06 57.4 240 25.8
CAN.G128.83 Capsicum annuum HOM05D001208 ORTHO05D001593 2.8e-06 57.0 215 25.6
CAN.G1343.8 Capsicum annuum HOM05D002673 ORTHO05D002766 2.8e-06 57.0 203 26.6
SEGI_15051 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 2.8e-06 57.0 260 26.5
Thhalv10017079m.g Eutrema salsugineum HOM05D000326 ORTHO05D000312 3.7e-06 56.6 221 25.8
Lju583C6T2 Lonicera japonica HOM05D000182 ORTHO05D000112 3.7e-06 56.6 197 26.4
Peaxi162Scf01320g00002 Petunia axillaris HOM05D001208 ORTHO05D001593 3.7e-06 56.6 215 26.5
SEGI_32428 Sequoiadendron giganteum HOM05D000402 ORTHO05D000263 4.8e-06 56.2 86 40.7
arahy.Tifrunner.gnm1.ann1.A2KH1K Arachis hypogaea HOM05D000182 ORTHO05D000112 6.2e-06 55.8 215 24.2
MD01G1139100 Malus domestica HOM05D000326 ORTHO05D000312 6.2e-06 55.8 192 31.2
Nn2g14244 Nelumbo nucifera HOM05D000182 ORTHO05D000112 6.2e-06 55.8 212 26.9
SMO049G0001 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 6.2e-06 55.8 137 32.8
SMO200G0217 Selaginella moellendorffii HOM05D000402 ORTHO05D000263 6.2e-06 55.8 137 32.8
Thhalv10004629m.g Eutrema salsugineum HOM05D000402 ORTHO05D000263 8.2e-06 55.5 295 25.4


User provided reference genes

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