Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 7.7e-228 793.9 533 100.0
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.2e-182 642.9 534 73.8
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 5.6e-178 628.2 568 68.7
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 1.3e-163 580.5 533 75.8
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 5.1e-163 578.6 542 65.9
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 1.8e-139 500.4 571 55.0
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.1e-133 481.1 572 56.8
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 3.9e-131 472.6 573 56.2
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 3.7e-129 466.1 568 56.2
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 4.5e-127 459.1 562 56.9
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 1.8e-112 410.6 520 55.6
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.7e-100 369.4 362 61.0
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 6.1e-100 369.0 575 51.1
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 1.0e-99 368.2 540 53.9
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 5.2e-99 365.9 548 48.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.2e-98 364.8 546 52.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.2e-98 364.8 551 46.1
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.6e-95 354.4 545 48.4
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 3.5e-95 353.2 363 59.2
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 3.8e-94 349.7 366 60.1
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 6.5e-94 349.0 368 58.4
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.7e-92 342.8 370 58.6
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.0e-91 340.1 392 52.8
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.2e-90 338.2 365 60.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.5e-90 337.8 369 55.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.5e-90 337.8 352 58.5
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 2.0e-90 337.4 329 61.7
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 5.7e-90 335.9 363 60.9
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 9.8e-90 335.1 326 63.2
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.2e-89 334.0 358 61.2
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 2.8e-89 333.6 358 59.5
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 4.9e-89 332.8 373 57.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 8.3e-89 332.0 344 61.9
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 1.1e-88 331.6 358 61.2
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 1.1e-88 331.6 366 59.8
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 2.4e-88 330.5 361 57.3
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.6e-87 327.8 383 56.4
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.5e-87 326.6 352 50.0
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 4.5e-87 326.2 357 59.4
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 1.7e-86 324.3 372 55.4
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 3.8e-86 323.2 327 62.7
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 3.8e-86 323.2 347 56.2
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 5.0e-86 322.8 554 51.6
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.1e-85 321.6 557 45.8
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 2.5e-85 320.5 535 48.2
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.3e-85 320.1 358 55.3
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 2.1e-84 317.4 364 57.7
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 2.1e-84 317.4 331 61.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 2.8e-84 317.0 370 57.8
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 2.8e-84 317.0 550 45.5
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.0e-83 315.1 210 75.2
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.4e-83 314.7 375 58.1
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 1.8e-83 314.3 359 54.3
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.2e-83 312.8 381 54.3
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 6.8e-83 312.4 373 50.9
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 1.2e-82 311.6 361 59.3
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.5e-82 311.2 352 55.4
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 4.4e-82 309.7 356 56.7
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.1e-80 305.1 336 57.4
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.4e-80 303.9 353 53.5
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 4.1e-80 303.1 336 60.4
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 7.0e-80 302.4 328 58.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 4.6e-79 299.7 557 44.7
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 3.9e-78 296.6 375 54.1
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 8.6e-78 295.4 397 47.9
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.1e-77 295.0 357 54.1
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.9e-77 294.3 320 60.3
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 7.3e-77 292.4 201 73.1
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.1e-75 287.0 380 49.2
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.6e-74 283.9 368 49.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.4e-74 283.5 363 47.4
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.9e-72 277.7 376 52.1
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 2.4e-72 277.3 373 51.7
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 4.1e-72 276.6 339 51.9
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.0e-72 275.8 361 47.4
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 1.2e-71 275.0 361 51.5
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 2.7e-71 273.9 367 48.8
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.7e-70 271.2 318 50.6
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.3e-70 270.8 378 49.2
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 3.9e-70 270.0 337 51.3
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.9e-69 267.7 379 49.1
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 2.5e-69 267.3 330 56.1
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 2.5e-69 267.3 330 56.1
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 2.5e-69 267.3 367 49.0
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 7.3e-69 265.8 363 48.2
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 9.5e-69 265.4 372 50.3
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.6e-68 264.6 362 50.3
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 3.6e-68 263.5 343 48.4
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.7e-68 263.1 331 55.0
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 1.1e-67 261.9 329 56.2
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 3.1e-67 260.4 369 50.4
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 4.0e-67 260.0 349 50.7
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.2e-67 259.6 191 66.0
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 6.8e-67 259.2 324 55.6
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 6.8e-67 259.2 362 49.7
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 8.9e-67 258.8 324 55.6
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.5e-66 258.1 337 50.1
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 9.8e-66 255.4 194 68.0
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.9e-65 253.8 351 49.6
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 4.9e-65 253.1 323 54.5
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.1e-64 251.9 350 53.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 2.4e-64 250.8 365 45.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 4.1e-64 250.0 353 46.2
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 1.7e-62 244.6 219 58.0
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 3.5e-55 220.3 461 40.8
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 2.5e-53 214.2 367 48.5
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 2.6e-50 204.1 165 63.0
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 2.9e-49 200.7 559 36.3
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 1.4e-48 198.4 132 78.0
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 3.0e-46 190.7 177 56.5
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 3.0e-46 190.7 177 56.5
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 9.6e-45 185.7 139 67.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.7e-39 167.5 107 73.8
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 5.3e-35 153.3 90 78.9
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 2.2e-33 147.9 139 57.6
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.2e-32 144.1 417 39.3
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.0e-30 139.0 280 40.7
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.4e-29 132.9 91 71.4
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 1.3e-20 105.5 167 35.3
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.6e-20 105.1 64 78.1
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 3.7e-20 104.0 166 35.5
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 9.0e-19 99.4 150 34.7
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 2.0e-18 98.2 107 54.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 2.6e-18 97.8 62 80.6
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 5.0e-17 93.6 62 74.2
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-15 89.0 63 73.0
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 2.1e-15 88.2 82 50.0
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.1e-11 73.9 199 32.7
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 7.2e-08 63.2 219 37.4
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 6.7e-06 56.6 106 41.5
CBR_g41404 Chara braunii HOM05D002505 ORTHO05D006559 8.8e-06 56.2 68 35.3


User provided reference genes

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