Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 8.3e-48 193.4 96 100.0
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 4.2e-44 181.0 95 93.7
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 1.3e-40 169.5 91 91.2
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 4.1e-39 164.5 90 87.8
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 9.2e-39 163.3 90 87.8
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 2.0e-38 162.2 90 87.8
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 2.0e-38 162.2 90 87.8
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 2.0e-38 162.2 90 87.8
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 2.0e-38 162.2 90 86.7
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 3.5e-38 161.4 90 85.6
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.5e-38 161.0 90 85.6
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 4.5e-38 161.0 90 84.4
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 4.5e-38 161.0 89 87.6
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 4.5e-38 161.0 89 87.6
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 5.9e-38 160.6 90 85.6
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 5.9e-38 160.6 90 85.6
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 5.9e-38 160.6 90 87.8
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 5.9e-38 160.6 89 86.5
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 7.8e-38 160.2 90 85.6
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 1.0e-37 159.8 90 84.4
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 84.4
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 84.4
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 84.4
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.3e-37 159.5 90 84.4
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.7e-37 159.1 90 85.6
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 2.3e-37 158.7 90 86.7
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.3e-37 158.7 90 84.4
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 2.3e-37 158.7 90 84.4
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 2.3e-37 158.7 90 84.4
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 2.3e-37 158.7 90 84.4
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 2.3e-37 158.7 89 85.4
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 2.9e-37 158.3 90 84.4
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 3.9e-37 157.9 89 85.4
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 6.6e-37 157.1 89 84.3
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 6.6e-37 157.1 90 83.3
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 6.6e-37 157.1 90 84.4
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 6.6e-37 157.1 90 82.2
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 8.6e-37 156.8 90 85.6
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 8.6e-37 156.8 89 84.3
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 8.6e-37 156.8 90 82.2
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 1.1e-36 156.4 90 83.3
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 1.1e-36 156.4 90 82.2
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 1.9e-36 155.6 90 84.4
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 1.9e-36 155.6 87 85.1
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 1.9e-36 155.6 88 85.2
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 1.9e-36 155.6 90 85.6
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.5e-36 155.2 90 82.2
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 2.5e-36 155.2 90 82.2
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 2.5e-36 155.2 88 83.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 3.3e-36 154.8 90 83.3
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 3.3e-36 154.8 89 84.3
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 3.3e-36 154.8 90 82.2
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 4.3e-36 154.5 90 80.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 5.6e-36 154.1 90 81.1
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 5.6e-36 154.1 90 81.1
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 5.6e-36 154.1 87 86.2
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.6e-35 152.5 90 81.1
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 3.6e-35 151.4 90 77.8
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 3.6e-35 151.4 90 80.0
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 3.6e-35 151.4 88 83.0
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 4.7e-35 151.0 90 77.8
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 4.7e-35 151.0 88 80.7
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 4.7e-35 151.0 85 83.5
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 4.7e-35 151.0 88 83.0
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 8.0e-35 150.2 90 80.0
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 1.0e-34 149.8 88 79.5
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.4e-34 149.4 90 78.9
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.8e-34 149.1 88 81.8
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 5.2e-34 147.5 88 79.5
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 8.9e-34 146.7 89 74.2
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 1.5e-33 146.0 88 81.8
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 1.5e-33 146.0 90 74.4
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 2.0e-33 145.6 84 81.0
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.6e-33 145.2 89 76.4
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.6e-33 145.2 89 76.4
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.6e-33 145.2 89 76.4
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 3.4e-33 144.8 89 77.5
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 3.4e-33 144.8 90 81.1
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 5.8e-33 144.1 84 79.8
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 7.5e-33 143.7 89 75.3
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 2.2e-32 142.1 89 75.3
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 4.9e-32 141.0 89 74.2
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 4.9e-32 141.0 89 74.2
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 4.9e-32 141.0 89 74.2
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 4.9e-32 141.0 89 74.2
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 1.1e-31 139.8 89 73.0
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 1.9e-31 139.0 89 73.0
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 1.9e-31 139.0 89 73.0
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 1.9e-31 139.0 89 73.0
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 1.9e-31 139.0 89 73.0
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 1.9e-31 139.0 89 73.0
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 2.4e-31 138.7 89 73.0
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 2.4e-31 138.7 89 73.0
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 2.4e-31 138.7 89 73.0
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 3.2e-31 138.3 132 56.8
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 7.8e-30 133.7 86 73.3
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 7.8e-30 133.7 86 73.3
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 1.7e-29 132.5 88 73.9
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 1.7e-29 132.5 88 73.9
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 2.3e-29 132.1 119 59.7
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 3.9e-29 131.3 82 76.8
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 1.5e-28 129.4 90 74.4
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.6e-27 125.9 120 55.8
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 6.2e-27 124.0 142 52.1
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.3e-26 122.1 66 87.9
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 1.5e-25 119.4 66 86.4
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 3.4e-25 118.2 73 75.3
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 4.4e-25 117.9 66 86.4
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 5.8e-25 117.5 118 59.3
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 2.9e-24 115.2 90 65.6
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 2.4e-23 112.1 66 80.3
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 4.1e-23 111.3 65 83.1
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.1e-19 99.0 60 78.3
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 4.7e-19 97.8 91 61.5
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 6.2e-19 97.4 95 53.7
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 6.2e-19 97.4 89 61.8
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 3.1e-18 95.1 59 74.6
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 2.1e-14 82.4 83 45.8
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 2.1e-14 82.4 264 28.0
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 3.9e-13 78.2 83 43.4
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 2.5e-12 75.5 66 63.6
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 2.5e-12 75.5 69 49.3
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 1.6e-11 72.8 56 66.1
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 1.1e-10 70.1 70 51.4
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.5e-09 66.2 70 48.6
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 8.4e-08 60.5 49 53.1
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 3.2e-07 58.5 69 42.0


User provided reference genes

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