Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G118800 Phaseolus vulgaris HOM05D007925 ORTHO05D009727 4.0e-111 404.8 213 100.0
VMungo0540G0187 Vigna mungo HOM05D007925 ORTHO05D009727 6.9e-87 324.3 218 80.7
Glyma.09G034600 Glycine max HOM05D007925 ORTHO05D009727 5.1e-82 308.1 215 77.2
Glyma.15G139300 Glycine max HOM05D007925 ORTHO05D009727 3.4e-78 295.4 213 74.6
Lj6g0027570 Lotus japonicus HOM05D007925 ORTHO05D009727 2.8e-40 169.5 220 53.2
Medtr2g033900 Medicago truncatula HOM05D007925 ORTHO05D009727 5.2e-34 148.7 206 50.5
Glyma.17G035100 Glycine max HOM05D007925 ORTHO05D009727 5.0e-29 132.1 246 39.4
arahy.Tifrunner.gnm1.ann1.BW1DTW Arachis hypogaea HOM05D007925 ORTHO05D009727 6.6e-29 131.7 183 48.6
Ca_00972_v3 Cicer arietinum L. HOM05D000267 ORTHO05D000298 8.6e-29 131.3 176 51.7
arahy.Tifrunner.gnm1.ann1.8N1160 Arachis hypogaea HOM05D007925 ORTHO05D009727 4.3e-28 129.0 183 48.1
Psat1g161040 Pisum sativum HOM05D007925 ORTHO05D009727 6.1e-27 125.2 207 43.5
Lalb_Chr07g0182031 Lupinus albus HOM05D007925 ORTHO05D009727 1.4e-26 124.0 234 38.0
CiPaw.02G073300 Carya illinoinensis HOM05D007925 ORTHO05D009727 8.9e-26 121.3 224 39.3
QL12p029416 Quercus lobata HOM05D007925 ORTHO05D009727 8.9e-26 121.3 224 39.3
Haze_01318 Corylus avellana HOM05D007925 ORTHO05D009727 1.7e-24 117.1 213 39.9
Dinv44272 Davidia involucrata HOM05D007925 ORTHO05D009727 1.1e-23 114.4 228 36.4
Cfa015292 Carpinus fangiana HOM05D007925 ORTHO05D009727 1.4e-23 114.0 227 39.6
RcHm_v2.0_Chr4g0425771 Rosa chinensis HOM05D007925 ORTHO05D009727 3.2e-23 112.8 234 36.3
TPR.G28956 Trifolium pratense HOM05D007925 ORTHO05D009727 4.6e-22 109.0 165 45.5
TPR.G26552 Trifolium pratense HOM05D007925 ORTHO05D009727 5.6e-20 102.1 230 38.3
FvH4_4g20350 Fragaria vesca HOM05D007925 ORTHO05D009727 1.6e-19 100.5 222 36.5
Ciclev10005876m.g Citrus clementina HOM05D007925 ORTHO05D009727 2.1e-19 100.1 218 34.9
Lalb_Chr12g0200851 Lupinus albus HOM05D007925 ORTHO05D009727 6.2e-19 98.6 194 38.7
Haze_01320 Corylus avellana HOM05D007925 ORTHO05D009727 8.0e-19 98.2 187 38.5
FvH4_4g20280 Fragaria vesca HOM05D007925 ORTHO05D009727 1.0e-18 97.8 227 33.9
Atru.chr4.3043 Acer truncatum HOM05D007925 ORTHO05D009727 3.1e-18 96.3 230 31.7
Thecc.04G303500 Theobroma cacao HOM05D007925 ORTHO05D009727 2.0e-17 93.6 226 33.2
ClCG06G004510 Citrullus lanatus HOM05D007925 ORTHO05D009727 6.4e-16 88.6 229 33.6
CsaV3_6G028540 Cucumis sativus L. HOM05D007925 ORTHO05D009727 5.4e-15 85.5 230 31.7
COL.COLO4_34592 Corchorus olitorius HOM05D007925 ORTHO05D009727 2.7e-14 83.2 221 31.2
Gorai.005G067800 Gossypium raimondii HOM05D007925 ORTHO05D009727 2.7e-14 83.2 230 33.5
Prupe.1G115200 Prunus persica HOM05D007925 ORTHO05D009727 4.6e-14 82.4 224 35.3
FAN07G0172 Fragaria x ananassa HOM05D007925 ORTHO05D009727 7.8e-14 81.6 138 34.8
Rhsim04G0240400 Rhododendron simsii HOM05D007925 ORTHO05D009727 7.8e-14 81.6 226 32.3
Gohir.A02G055200 Gossypium hirsutum HOM05D007925 ORTHO05D009727 1.3e-13 80.9 230 33.0
Gohir.D02G060200 Gossypium hirsutum HOM05D007925 ORTHO05D009727 1.3e-13 80.9 230 33.0
Potri.012G102300 Populus trichocarpa HOM05D007925 ORTHO05D009727 1.3e-13 80.9 235 33.2
TWI09G1395 Tripterygium wilfordii HOM05D007925 ORTHO05D009727 1.7e-13 80.5 199 36.2
Actinidia18460 Actinidia chinensis HOM05D007925 ORTHO05D009727 3.9e-13 79.3 201 28.9
Manes.15G001100 Manihot esculenta HOM05D007925 ORTHO05D009727 9.5e-12 74.7 231 32.5
Sed0014435 Sechium edule HOM05D007925 ORTHO05D009727 1.6e-11 73.9 233 32.2
FAN12G1072 Fragaria x ananassa HOM05D007925 ORTHO05D009727 3.6e-11 72.8 213 29.6
Nn4g25550 Nelumbo nucifera HOM05D007925 ORTHO05D009727 6.2e-11 72.0 256 29.7
MD16G1151500 Malus domestica HOM05D007925 ORTHO05D009727 2.3e-10 70.1 141 34.8
AUR62039262 Chenopodium quinoa HOM05D007925 ORTHO05D009727 4.0e-10 69.3 214 29.4
MD13G1151000 Malus domestica HOM05D007925 ORTHO05D009727 5.2e-10 68.9 140 34.3
Ah.13g071370 Amaranthus hybridus HOM05D007925 ORTHO05D009727 6.8e-10 68.6 235 31.1
Sopen03g024830 Solanum pennellii HOM05D007925 ORTHO05D009727 1.5e-09 67.4 234 30.3
TAR633G0906 Trochodendron aralioides HOM05D007925 ORTHO05D009727 3.4e-09 66.2 221 33.9
Nitab4.5_0007718g0010 Nicotiana tabacum HOM05D007925 ORTHO05D009727 5.8e-09 65.5 241 31.5
Oeu063653.1 Olea europaea HOM05D007925 ORTHO05D009727 1.7e-08 63.9 232 26.7
Solyc03g093980.2 Solanum lycopersicum HOM05D007925 ORTHO05D009727 1.7e-08 63.9 234 29.9
FvH4_4g20060 Fragaria vesca HOM05D007925 ORTHO05D009727 3.7e-08 62.8 173 32.4
Nitab4.5_0009429g0010 Nicotiana tabacum HOM05D007925 ORTHO05D009727 1.1e-07 61.2 241 29.9
PGSC0003DMG400008341 Solanum tuberosum HOM05D007925 ORTHO05D009727 1.9e-07 60.5 204 29.4
MELO3C021261.2 Cucumis melo HOM05D007925 ORTHO05D009727 5.4e-07 58.9 211 29.9
Medtr5g054260 Medicago truncatula HOM05D007925 ORTHO05D009727 1.2e-06 57.8 140 38.6
Sabra12G0074900 Salix brachista HOM05D007925 ORTHO05D009727 1.2e-06 57.8 218 29.8
AL3G17650 Arabidopsis lyrata HOM05D011548 ORTHO05D013687 4.6e-06 55.8 217 26.7
MBI18_g22338_MAGBIO Magnolia biondii HOM05D020265 ORTHO05D009727 6.0e-06 55.5 178 27.5
CANSAT35G1711 Cannabis sativa HOM05D007925 ORTHO05D009727 7.8e-06 55.1 203 29.1


User provided reference genes

Program Settings