Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.2e-171 606.7 359 100.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 5.4e-92 342.0 272 69.9
Phvul.008G082101 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.8e-88 329.7 377 53.8
Phvul.008G081900 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.2e-85 320.1 377 52.8
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 1.1e-76 291.2 272 61.8
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 2.2e-45 187.2 384 37.2
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 1.2e-38 164.9 291 40.9
VMungo1309G0044 Vigna mungo HOM05D014262 ORTHO05D018084 6.5e-29 132.5 386 31.3
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-26 124.4 205 39.0
VMungo1309G1023 Vigna mungo HOM05D014262 ORTHO05D018084 5.7e-25 119.4 301 33.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 6.3e-24 115.9 275 33.5
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 1.1e-23 115.2 275 33.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 1.2e-22 111.7 275 32.4
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 4.5e-22 109.8 275 32.0
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.4e-20 104.8 214 36.4
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 4.2e-20 103.2 268 31.7
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 9.4e-20 102.1 277 30.3
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 8.8e-18 95.5 188 33.0
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 1.1e-17 95.1 106 46.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 2.0e-17 94.4 185 36.2
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 2.6e-17 94.0 100 49.0
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 4.4e-17 93.2 97 48.5
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 7.4e-17 92.4 226 32.3
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.4e-17 92.4 187 34.8
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 7.4e-17 92.4 106 45.3
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 7.4e-17 92.4 98 48.0
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 9.7e-17 92.0 100 48.0
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 9.7e-17 92.0 274 28.8
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.3e-16 91.7 103 45.6
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.3e-16 91.7 266 27.8
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 1.7e-16 91.3 103 45.6
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 1.7e-16 91.3 96 46.9
VMungo0029G0001 Vigna mungo HOM05D014262 ORTHO05D018084 1.7e-16 91.3 207 34.8
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 2.2e-16 90.9 100 48.0
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.2e-16 90.9 191 32.5
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 2.8e-16 90.5 113 43.4
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 2.8e-16 90.5 99 47.5
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 6.3e-16 89.4 183 36.6
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 6.3e-16 89.4 275 28.0
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 8.2e-16 89.0 96 45.8
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 8.2e-16 89.0 135 38.5
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 8.2e-16 89.0 96 47.9
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 1.1e-15 88.6 99 43.4
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 1.1e-15 88.6 106 44.3
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.1e-15 88.6 126 38.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 1.4e-15 88.2 105 45.7
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 1.8e-15 87.8 181 38.1
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 1.8e-15 87.8 103 43.7
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 2.4e-15 87.4 177 37.3
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 3.1e-15 87.0 99 46.5
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 3.1e-15 87.0 103 45.6
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 7.0e-15 85.9 127 40.2
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 7.0e-15 85.9 147 40.8
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.2e-14 85.1 282 28.4
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.5e-14 84.7 144 35.4
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 1.5e-14 84.7 185 34.1
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 2.6e-14 84.0 106 44.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 2.6e-14 84.0 148 35.1
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 2.6e-14 84.0 210 33.3
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 4.5e-14 83.2 106 43.4
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 5.9e-14 82.8 106 42.5
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 5.9e-14 82.8 181 33.1
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 5.9e-14 82.8 106 41.5
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 7.7e-14 82.4 148 34.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 7.7e-14 82.4 180 32.8
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 1.0e-13 82.0 138 34.8
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 1.3e-13 81.6 106 41.5
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 1.3e-13 81.6 133 38.3
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.7e-13 81.3 179 36.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 1.7e-13 81.3 252 29.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 1.7e-13 81.3 186 34.9
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 1.7e-13 81.3 106 42.5
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 2.9e-13 80.5 106 41.5
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 2.9e-13 80.5 96 45.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 2.9e-13 80.5 99 41.4
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 3.8e-13 80.1 151 36.4
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 3.8e-13 80.1 164 33.5
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 5.0e-13 79.7 122 35.2
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 5.0e-13 79.7 248 29.0
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 6.5e-13 79.3 179 36.3
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 6.5e-13 79.3 232 29.3
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.5e-13 79.3 210 31.9
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 8.5e-13 79.0 282 26.6
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 8.5e-13 79.0 96 44.8
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 1.1e-12 78.6 99 43.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 1.1e-12 78.6 183 32.8
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 1.5e-12 78.2 153 33.3
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.5e-12 78.2 117 38.5
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.5e-12 78.2 106 41.5
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.5e-12 78.2 106 41.5
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.9e-12 77.8 124 38.7
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 1.9e-12 77.8 117 39.3
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 1.9e-12 77.8 107 43.9
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 1.9e-12 77.8 181 32.6
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 3.2e-12 77.0 123 36.6
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.2e-12 76.6 109 38.5
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 5.5e-12 76.3 197 28.9
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 5.5e-12 76.3 163 33.7
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 5.5e-12 76.3 122 35.2
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 7.2e-12 75.9 124 37.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 7.2e-12 75.9 202 30.7
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 9.4e-12 75.5 244 29.1
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 9.4e-12 75.5 121 36.4
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 9.4e-12 75.5 121 36.4
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 1.2e-11 75.1 244 28.7
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.2e-11 75.1 96 39.6
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.2e-11 75.1 117 38.5
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 1.6e-11 74.7 103 40.8
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.6e-11 74.7 123 35.0
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 2.1e-11 74.3 181 32.6
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 2.7e-11 73.9 131 32.8
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 3.6e-11 73.6 121 35.5
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 4.7e-11 73.2 129 34.1
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.7e-11 73.2 140 32.9
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.1e-11 72.8 170 30.0
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 6.1e-11 72.8 162 33.3
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 6.1e-11 72.8 106 35.8
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 6.1e-11 72.8 150 34.0
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.0e-11 72.4 96 38.5
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 8.0e-11 72.4 142 35.9
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 8.0e-11 72.4 177 30.5
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 8.0e-11 72.4 190 28.4
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 8.0e-11 72.4 125 36.8
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.4e-10 71.6 99 40.4
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 2.3e-10 70.9 129 36.4
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.0e-10 70.5 103 36.9
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 3.0e-10 70.5 117 35.9
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 3.0e-10 70.5 182 29.1
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 3.9e-10 70.1 103 36.9
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 3.9e-10 70.1 135 33.3
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 5.2e-10 69.7 244 28.7
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 6.7e-10 69.3 96 44.8
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 6.7e-10 69.3 123 33.3
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 1.5e-09 68.2 106 36.8
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.0e-09 67.8 98 37.8
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 4.4e-09 66.6 74 44.6
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 4.4e-09 66.6 74 44.6
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 4.4e-09 66.6 106 39.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 5.7e-09 66.2 182 30.2
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 5.7e-09 66.2 150 31.3
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 7.4e-09 65.9 174 29.9
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-08 64.7 104 37.5
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.7e-08 64.7 270 27.8
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.7e-08 64.7 123 30.9
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 2.8e-08 63.9 143 32.2
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 1.8e-07 61.2 75 44.0
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.1e-07 60.5 106 33.0
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 5.3e-07 59.7 96 37.5
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.6e-06 58.2 104 38.5
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.6e-06 58.2 91 44.0
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 1.6e-06 58.2 84 41.7


User provided reference genes

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