Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 0.0e+00 1447.2 730 100.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 0.0e+00 1341.3 730 91.4
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 0.0e+00 1260.7 728 85.4
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 0.0e+00 1184.9 728 79.9
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 0.0e+00 1174.8 728 78.6
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 0.0e+00 1169.1 727 79.0
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 0.0e+00 1167.9 728 79.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 0.0e+00 1163.7 731 77.8
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 0.0e+00 1140.9 656 86.1
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1103.2 731 74.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1097.4 731 74.6
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 0.0e+00 1079.7 729 73.8
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.7e-286 989.2 728 66.3
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 1.7e-286 989.2 735 66.3
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 6.1e-284 980.7 731 66.1
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 4.4e-282 974.5 733 65.5
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.7e-281 972.6 735 65.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.3e-281 970.7 733 64.3
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 3.1e-280 968.4 731 65.4
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.2e-279 966.5 735 65.4
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.2e-279 966.5 735 65.4
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.0e-279 965.7 735 64.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.6e-279 965.3 717 66.2
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.4e-279 964.9 735 65.3
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 6.5e-278 960.7 735 63.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 6.1e-276 954.1 735 64.6
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.8e-275 952.6 732 63.1
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 5.2e-275 951.0 732 62.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 1.1e-274 949.9 761 61.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.3e-273 946.4 727 63.5
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.3e-273 946.4 735 63.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 6.3e-273 944.1 733 62.1
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.1e-272 943.3 767 62.1
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.4e-272 942.2 731 64.0
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 3.1e-272 941.8 737 64.6
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 7.0e-272 940.6 732 63.8
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.9e-270 935.3 736 63.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 5.0e-270 934.5 738 63.4
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 1.5e-269 932.9 733 63.3
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 2.5e-269 932.2 729 61.7
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.5e-269 932.2 735 64.1
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 4.7e-268 927.9 730 62.9
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.8e-267 926.0 732 63.1
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 2.6e-266 922.2 734 62.4
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.9e-262 908.7 729 61.9
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 6.5e-262 907.5 742 60.9
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 4.2e-261 904.8 732 61.2
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 7.2e-261 904.0 735 61.0
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 2.1e-260 902.5 733 61.4
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 2.1e-260 902.5 729 60.2
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 4.7e-260 901.4 731 61.3
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 6.1e-260 901.0 735 61.0
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 6.8e-259 897.5 731 60.7
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.0e-258 896.0 730 60.0
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 5.7e-258 894.4 735 60.3
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 9.8e-258 893.6 732 61.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 3.7e-257 891.7 731 60.9
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.7e-257 891.7 733 61.4
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 3.7e-257 891.7 735 60.3
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 1.5e-253 879.8 731 60.1
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 1.2e-252 876.7 796 56.0
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.6e-252 876.3 733 60.2
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.6e-250 869.0 735 58.8
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 4.4e-250 868.2 732 59.0
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 8.3e-249 864.0 732 58.1
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 4.1e-248 861.7 707 60.8
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 4.5e-247 858.2 739 58.9
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.8e-246 855.1 674 62.2
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 7.3e-245 850.9 731 58.4
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 4.4e-242 841.6 706 59.3
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 6.6e-238 827.8 706 59.5
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 1.2e-228 797.0 739 55.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 4.0e-227 792.0 609 62.6
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 6.8e-227 791.2 671 59.9
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 4.9e-225 785.0 600 63.3
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.1e-224 783.9 727 55.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.2e-224 780.8 754 53.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.3e-222 776.9 736 55.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 2.8e-220 769.2 626 61.8
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 8.1e-220 767.7 730 52.5
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 6.8e-219 764.6 603 60.2
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 3.4e-218 762.3 731 54.6
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 6.4e-217 758.1 710 54.2
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.2e-210 737.3 763 52.3
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.7e-209 733.4 736 50.3
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.6e-207 725.3 607 59.1
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 4.6e-207 725.3 827 49.5
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.7e-206 723.4 497 69.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 3.3e-205 719.2 637 56.8
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.6e-191 673.7 623 53.9
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.3e-190 669.8 493 64.3
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.3e-190 669.8 626 56.5
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 4.3e-181 639.0 731 47.7
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.4e-179 634.0 628 53.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.5e-178 629.0 454 65.4
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.9e-169 599.7 454 62.6
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 6.1e-167 592.0 526 57.6
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 9.1e-163 578.2 740 43.9
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 4.7e-159 565.8 740 43.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 4.1e-155 552.7 605 47.9
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.0e-150 536.6 423 62.2
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.5e-133 478.8 580 44.0
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 7.0e-131 472.2 436 57.3
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.7e-121 441.0 628 43.2
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 6.4e-116 422.5 840 34.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 3.1e-110 403.7 383 53.5
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.6e-109 400.6 539 40.6
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.7e-106 390.6 479 43.8
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.3e-105 388.3 348 56.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 5.2e-102 376.3 289 63.3
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.3e-96 357.1 467 42.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.4e-83 313.2 225 64.9
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.0e-76 292.4 238 65.1
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 2.4e-62 244.6 665 30.2
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.7e-57 226.5 125 75.2
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 8.8e-57 226.1 314 42.4
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-56 225.3 188 60.1
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 2.8e-55 221.1 258 44.2
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.5e-48 198.7 323 34.7
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-48 196.8 144 64.6
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.5e-43 181.4 125 67.2
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.8e-41 175.3 210 50.0
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.1e-38 166.0 125 64.8
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.5e-32 145.6 115 72.2
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.4e-32 144.1 104 65.4
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.7e-32 143.7 114 56.1
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.8e-30 138.7 105 61.0
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.1e-26 125.2 66 81.8
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.2e-25 120.6 164 43.9
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 6.8e-25 120.2 131 48.9
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 9.8e-24 116.3 94 72.3
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 5.0e-20 104.0 84 71.4
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 5.7e-16 90.5 72 66.7
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 3.2e-14 84.7 299 26.4
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.4e-14 84.0 61 57.4
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 6.1e-10 70.5 47 70.2
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 1.8e-09 68.9 44 70.5
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 2.0e-08 65.5 74 48.6
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.7e-07 62.4 60 45.0
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 4.9e-07 60.8 38 65.8
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 1.1e-06 59.7 44 59.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.1e-06 59.7 41 75.6
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.9e-06 58.9 34 70.6
VMungo0251G2379 Vigna mungo HOM05D005479 ORTHO05D436792 4.1e-06 57.8 71 53.5


User provided reference genes

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