Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 7.8e-169 597.0 303 100.0
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.6e-166 589.3 303 98.3
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 9.3e-162 573.5 303 94.7
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.5e-161 571.6 303 95.4
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 8.4e-155 550.4 303 91.7
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.4e-154 549.7 303 90.4
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.2e-153 546.6 303 90.1
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.0e-153 544.3 303 89.4
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.0e-152 543.5 303 89.4
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 3.9e-152 541.6 303 90.1
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 6.7e-152 540.8 303 89.8
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 3.3e-151 538.5 303 88.8
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 3.5e-145 518.5 303 86.5
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 2.3e-144 515.8 300 85.0
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.3e-144 515.8 300 84.7
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 5.1e-144 514.6 300 86.0
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 8.7e-144 513.8 300 84.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 7.4e-143 510.8 303 84.2
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 2.8e-142 508.8 303 84.2
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 2.8e-142 508.8 300 84.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 4.8e-142 508.1 303 85.1
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 6.3e-142 507.7 300 83.7
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.4e-141 506.5 300 84.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.8e-141 506.1 302 82.8
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.4e-141 505.8 300 84.3
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 3.1e-141 505.4 300 83.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 4.1e-141 505.0 300 83.7
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.5e-140 503.1 303 82.2
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.0e-140 502.7 316 80.1
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.4e-140 501.9 303 82.8
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 4.5e-140 501.5 300 83.0
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 4.5e-140 501.5 303 84.5
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 5.9e-140 501.1 301 82.1
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.0e-139 500.4 303 81.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 1.7e-139 499.6 303 83.8
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.7e-139 499.6 301 82.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.9e-139 498.8 303 82.2
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 6.5e-139 497.7 301 82.1
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 6.5e-139 497.7 303 81.8
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 8.5e-139 497.3 303 82.5
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 2.5e-138 495.7 303 82.2
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 3.2e-138 495.4 303 81.2
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 7.2e-138 494.2 303 81.8
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 9.3e-138 493.8 303 80.9
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.6e-137 491.5 303 82.5
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 6.1e-137 491.1 303 81.5
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 6.1e-137 491.1 302 80.1
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.3e-136 490.0 301 82.4
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.3e-136 490.0 301 79.7
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.8e-136 489.6 302 79.8
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 2.3e-136 489.2 303 80.2
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 2.3e-136 489.2 300 79.7
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.0e-136 488.8 301 81.7
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 80.7
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 8.7e-136 487.3 300 79.7
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 8.7e-136 487.3 303 80.5
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 8.7e-136 487.3 298 82.2
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.1e-135 486.9 303 81.2
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.7
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.5e-135 486.5 301 81.4
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.9e-135 486.1 301 78.7
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.3e-135 485.3 297 82.2
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.3e-135 485.3 300 79.3
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 3.3e-135 485.3 301 78.7
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 5.7e-135 484.6 300 78.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 2.8e-134 482.3 300 79.3
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 6.3e-134 481.1 303 80.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.1e-133 480.3 302 78.8
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.4e-133 479.9 303 77.6
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.4e-133 479.9 300 79.0
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 3.1e-133 478.8 301 78.1
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 3.1e-133 478.8 303 79.2
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.1e-133 478.4 298 81.2
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 5.3e-133 478.0 303 77.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 3.4e-132 475.3 305 78.0
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.0e-131 473.8 300 79.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.7e-131 473.0 298 77.5
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 2.9e-131 472.2 300 77.0
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 5.0e-131 471.5 303 78.2
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 6.5e-131 471.1 300 77.3
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.1e-130 470.3 303 75.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 2.5e-130 469.2 302 78.1
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 2.5e-130 469.2 302 78.1
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 5.5e-130 468.0 300 78.3
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 1.2e-129 466.8 294 78.2
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 1.2e-129 466.8 303 77.2
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 1.6e-129 466.5 302 77.8
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.7e-129 465.7 303 76.6
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 76.6
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 3.6e-129 465.3 303 77.6
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 4.6e-129 464.9 302 77.2
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 6.1e-129 464.5 303 76.6
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 7.9e-129 464.2 298 76.5
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.8e-128 463.0 303 76.9
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 3.9e-128 461.8 303 77.6
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.1e-128 461.5 321 73.2
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 6.7e-128 461.1 303 76.6
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.1e-127 460.3 303 75.2
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 1.1e-127 460.3 303 74.9
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 2.6e-127 459.1 303 74.6
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 5.7e-127 458.0 303 75.6
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 7.4e-127 457.6 345 69.0
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 9.7e-127 457.2 303 75.2
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 9.7e-127 457.2 298 75.8
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 2.2e-126 456.1 303 76.2
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 3.7e-126 455.3 303 73.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 1.4e-125 453.4 300 74.0
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.8e-125 453.0 301 74.8
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 4.1e-125 451.8 316 72.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 3.4e-124 448.7 303 73.9
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 3.4e-124 448.7 300 75.7
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 2.2e-123 446.0 309 74.4
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 7.9e-121 437.6 338 67.5
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 8.8e-120 434.1 249 85.5
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 3.3e-119 432.2 241 87.6
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 7.0e-117 424.5 293 71.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 1.2e-116 423.7 298 67.8
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.2e-116 423.7 259 79.9
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 1.0e-115 420.6 293 70.3
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 6.5e-115 417.9 300 71.3
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.9e-114 416.4 288 70.8
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 8.8e-112 407.5 301 70.1
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 3.7e-110 402.1 312 68.9
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 3.7e-110 402.1 340 60.9
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 5.0e-107 391.7 303 67.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 5.2e-104 381.7 295 63.4
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 7.5e-103 377.9 305 63.6
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.8e-102 375.9 209 87.6
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.1e-101 374.0 300 67.0
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.5e-98 361.7 509 43.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 7.2e-98 361.3 290 59.3
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.0e-96 357.5 209 82.8
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 5.0e-91 338.6 200 85.0
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.9e-90 336.7 220 77.3
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 8.9e-80 301.2 242 67.8
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 2.0e-79 300.1 246 61.0
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 5.0e-75 285.4 298 51.0
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 5.0e-75 285.4 245 64.9
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.6e-65 252.7 154 82.5
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.1e-53 214.5 281 42.7
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.6e-52 210.7 298 40.9
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 5.3e-48 195.7 163 60.1
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.4e-45 187.6 108 83.3
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 3.2e-37 159.8 101 75.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.8e-35 154.1 199 49.2
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 9.6e-34 148.3 84 83.3
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.6e-31 140.2 84 81.0
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 2.6e-23 113.6 231 30.3
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 3.8e-22 109.8 70 74.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.1e-21 108.2 151 41.7
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.4e-21 107.8 148 44.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 3.2e-21 106.7 87 67.8
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 2.7e-20 103.6 63 74.6
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.0e-19 101.7 83 63.9
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 5.1e-19 99.4 82 64.6
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 1.2e-15 88.2 121 45.5
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 1.3e-06 58.2 62 54.8
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.7e-06 57.8 40 67.5
arahy.Tifrunner.gnm1.ann1.N1YJY2 Arachis hypogaea HOM05D001256 ORTHO05D000106 2.9e-06 57.0 35 82.9
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-06 57.0 32 75.0


User provided reference genes

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