Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 5.9e-118 427.6 218 100.0
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 1.2e-91 340.1 219 83.1
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 4.4e-81 305.1 219 70.3
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.3e-80 303.5 195 77.4
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 3.8e-80 302.0 195 77.4
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 4.9e-80 301.6 194 76.8
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.1e-79 300.4 219 69.9
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 3.2e-79 298.9 194 77.3
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 9.2e-79 297.4 220 70.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 9.2e-79 297.4 173 88.4
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 1.6e-78 296.6 194 76.8
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 2.1e-78 296.2 215 72.1
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 1.3e-77 293.5 189 77.8
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.3e-77 292.7 194 74.2
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 8.6e-77 290.8 194 74.7
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 3.3e-76 288.9 206 71.8
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 4.3e-76 288.5 194 75.3
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.2e-75 287.0 196 72.4
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.2e-75 287.0 193 73.6
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 3.6e-75 285.4 211 68.7
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.4e-74 283.5 219 66.7
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 1.4e-74 283.5 218 66.1
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 3.1e-74 282.3 194 74.2
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 5.2e-74 281.6 193 72.5
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 6.9e-74 281.2 194 70.1
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 1.5e-73 280.0 179 77.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 2.6e-73 279.3 221 65.2
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 2.6e-73 279.3 205 67.8
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 3.4e-73 278.9 195 71.3
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 5.8e-73 278.1 193 72.0
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 7.6e-73 277.7 192 71.4
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 7.6e-73 277.7 192 68.8
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 7.6e-73 277.7 195 73.8
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.3e-72 276.9 195 71.3
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 3.8e-72 275.4 205 67.8
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 6.4e-72 274.6 194 69.6
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.1e-71 273.9 216 67.1
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.4e-71 273.5 208 65.9
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 2.4e-71 272.7 195 69.7
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 3.2e-71 272.3 194 69.1
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 4.2e-71 271.9 193 69.4
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 4.2e-71 271.9 195 70.8
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 5.4e-71 271.6 195 69.2
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 9.3e-71 270.8 191 70.7
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.6e-70 270.0 209 67.0
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 2.1e-70 269.6 189 71.4
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-70 269.2 193 68.9
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.5e-70 268.9 212 64.2
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 6.0e-70 268.1 193 68.4
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 6.0e-70 268.1 193 71.5
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 7.8e-70 267.7 209 66.0
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.7e-69 266.5 195 67.7
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 2.3e-69 266.2 194 68.0
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.0e-69 265.8 179 79.3
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.9e-69 265.4 209 65.6
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 3.9e-69 265.4 213 64.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 5.1e-69 265.0 211 66.8
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 8.7e-69 264.2 194 67.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.1e-68 263.8 189 69.8
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.5e-68 263.5 202 63.9
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 1.5e-68 263.5 195 67.2
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 3.3e-68 262.3 188 68.6
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 4.3e-68 261.9 208 64.9
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 5.6e-68 261.5 189 71.4
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 7.3e-68 261.2 195 66.2
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 9.6e-68 260.8 195 65.6
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 1.6e-67 260.0 195 65.6
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 2.8e-67 259.2 191 70.2
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 3.6e-67 258.8 195 67.2
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.1e-67 257.7 194 64.9
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 8.1e-67 257.7 195 66.7
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 8.1e-67 257.7 180 71.1
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 1.1e-66 257.3 191 68.6
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 3.1e-66 255.8 176 71.6
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.0e-66 255.4 209 64.6
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 5.3e-66 255.0 189 67.2
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 6.9e-66 254.6 218 61.5
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 6.9e-66 254.6 179 68.7
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.2e-65 253.8 207 61.8
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.0e-65 253.1 191 68.1
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 4.5e-65 251.9 195 63.1
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 4.5e-65 251.9 194 63.9
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.2e-64 249.6 195 62.6
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 3.2e-63 245.7 284 51.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.2e-63 245.4 146 82.2
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 5.4e-63 245.0 202 60.9
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.6e-62 243.4 189 65.1
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 2.7e-62 242.7 203 61.6
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 6.0e-62 241.5 189 63.0
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.8e-61 240.0 189 62.4
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.8e-61 240.0 186 65.6
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 3.9e-61 238.8 289 49.8
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 5.1e-61 238.4 188 62.8
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 1.5e-60 236.9 188 61.7
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.9e-60 236.5 194 60.3
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 4.8e-59 231.9 191 60.7
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 7.6e-57 224.6 191 61.8
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 1.4e-55 220.3 143 73.4
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 4.2e-55 218.8 175 66.9
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.2e-54 217.2 198 59.1
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.3e-53 213.0 182 58.2
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 6.7e-53 211.5 191 56.0
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 4.3e-52 208.8 191 55.5
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.6e-46 188.7 151 62.3
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 9.0e-42 174.5 102 84.3
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-38 162.9 98 77.6
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.4e-34 150.6 166 48.2
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 2.4e-34 149.8 166 47.0
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 2.6e-33 146.4 166 46.4
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.1e-30 135.2 170 47.6
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-29 134.4 78 82.1
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-29 133.3 78 80.8
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.3e-28 129.4 134 56.7
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 4.4e-28 129.0 80 76.2
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.4e-28 129.0 78 78.2
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.6e-22 110.5 77 75.3
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 3.0e-21 106.3 84 63.1
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 7.4e-20 101.7 224 33.0
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 1.4e-18 97.4 61 75.4
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 4.1e-18 95.9 61 73.8
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.5e-17 92.4 54 79.6
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 1.1e-10 71.2 40 77.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 9.1e-10 68.2 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 9.1e-10 68.2 39 76.9
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 2.0e-09 67.0 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 1.9e-07 60.5 35 82.9


User provided reference genes

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