Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 2041.5 1036 100.0
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1915.6 1023 94.2
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1798.5 1040 87.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1789.6 1025 87.8
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1667.1 1014 83.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1615.1 1019 80.3
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1604.0 1025 79.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1603.2 1025 79.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1567.7 1016 78.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1016 78.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1553.5 981 80.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1535.4 1027 76.5
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1489.6 1027 74.1
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1486.9 1015 73.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1481.1 1026 72.9
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1474.9 1028 72.3
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1470.7 1027 73.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1464.5 1025 71.6
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1464.1 1027 71.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1462.2 1030 72.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1460.3 1017 71.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1453.0 1018 72.6
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1016 71.1
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1450.3 1020 71.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1449.9 1026 71.4
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1442.2 1027 71.1
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1441.4 1025 70.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1440.6 1027 71.0
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1440.2 1025 70.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1437.2 1027 70.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1436.4 1025 70.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1436.4 1025 70.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1435.6 1023 71.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1435.6 1028 70.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1435.2 1025 70.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1432.5 1026 71.2
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1430.2 1015 70.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1428.3 1020 70.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1425.6 1035 69.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1425.2 1025 69.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1424.5 1027 69.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1415.6 1026 68.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1415.2 1018 71.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1405.2 986 71.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1397.5 1021 68.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1387.9 1014 67.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1020 68.1
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1382.9 1016 68.6
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1374.8 1020 68.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1374.4 1025 68.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1369.8 1018 68.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1369.4 984 69.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1368.2 1026 67.8
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1366.3 1027 68.1
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1364.0 1014 68.3
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1357.4 1018 66.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1342.8 1027 67.8
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1339.7 1024 65.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1332.8 1019 66.8
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1330.9 1025 65.7
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1328.2 1024 65.2
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1328.2 1019 63.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1327.4 1026 64.3
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1323.5 1015 65.4
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1320.4 1018 66.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1318.1 1016 64.2
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1318.1 1025 65.6
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1316.2 1026 65.4
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1314.7 1027 66.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1308.9 1020 65.2
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1307.7 1020 65.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1304.3 1017 63.9
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1303.5 1021 65.2
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1302.3 1021 65.1
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1291.6 1023 63.7
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1290.4 1018 64.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1288.9 1026 64.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1288.5 1021 64.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1274.6 1026 63.5
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1270.4 1021 62.3
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1268.1 1018 64.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1266.5 1019 62.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1264.2 1016 63.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1254.6 1020 64.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1253.8 1016 63.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1249.6 1026 62.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1249.6 991 63.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1248.0 1021 61.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1243.0 985 62.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1240.7 1027 64.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1237.2 1074 60.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1209.9 952 62.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1206.4 1024 60.6
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1174.8 995 61.9
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1154.0 1016 58.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1145.2 993 59.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1143.3 1011 57.4
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1133.6 967 62.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1130.9 1106 55.7
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1123.2 895 63.5
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1118.2 953 60.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1084.3 805 68.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 2.1e-311 1072.4 1029 55.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 5.4e-286 988.0 1003 56.7
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.4e-278 963.4 864 58.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 2.6e-240 836.3 650 67.1
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.5e-240 835.5 634 66.9
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.4e-224 782.7 1040 41.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.3e-223 780.8 1032 43.5
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.8e-223 779.2 1024 42.1
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.5e-223 778.5 795 53.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 6.5e-207 725.3 1037 43.0
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.2e-204 715.7 1028 42.8
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.1e-201 706.4 1028 42.3
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 7.0e-201 705.3 600 62.0
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.2e-194 683.7 990 39.3
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.6e-192 677.6 999 41.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.3e-186 655.6 641 54.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.5e-182 643.7 1016 38.1
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 2.1e-165 587.4 471 66.9
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-159 567.8 883 40.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.7e-144 517.3 486 55.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.3e-129 465.7 385 61.6
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.8e-114 417.2 354 59.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.8e-101 373.6 256 73.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.4e-100 372.1 210 87.1
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.5e-73 282.3 1131 24.6
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 4.3e-73 280.8 221 67.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.2e-47 194.1 135 71.9
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.0e-42 179.9 369 32.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.1e-41 176.4 109 76.1
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.5e-41 175.3 339 33.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.2e-40 172.9 168 53.6
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 3.0e-34 151.8 111 70.3
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 3.0e-34 151.8 111 70.3
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 9.6e-17 93.6 72 61.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.1e-15 90.1 249 28.9
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 7.6e-14 84.0 62 64.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.8e-10 72.8 50 74.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.8e-10 72.8 50 74.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 3.9e-10 71.6 253 22.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.1e-09 70.1 67 49.3
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.6e-08 66.2 75 53.3
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 3.7e-08 65.1 221 26.2
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 2.4e-07 62.4 182 25.8
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.4e-07 62.4 88 45.5
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 1.2e-06 60.1 94 43.6
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 4.5e-06 58.2 107 38.3


User provided reference genes

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