Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G093933 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 1.8e-237 825.5 402 100.0
VMungo0540G2049 Vigna mungo HOM05D002553 ORTHO05D002767 3.8e-203 711.4 393 87.8
Glyma.19G237200 Glycine max HOM05D002553 ORTHO05D002767 7.7e-188 660.6 401 81.0
Phvul.006G093922 Phaseolus vulgaris HOM05D002553 ORTHO05D002767 6.5e-187 657.5 400 79.8
Lj1g0019778 Lotus japonicus HOM05D002553 ORTHO05D002767 3.0e-168 595.5 396 74.7
Ca_09373_v3 Cicer arietinum L. HOM05D002553 ORTHO05D002767 1.0e-160 570.5 392 73.2
Psat3g010200 Pisum sativum HOM05D002553 ORTHO05D002767 1.6e-156 556.6 394 71.1
arahy.Tifrunner.gnm1.ann1.NG2XET Arachis hypogaea HOM05D002553 ORTHO05D002767 2.9e-155 552.4 398 69.8
Medtr7g113850 Medicago truncatula HOM05D002553 ORTHO05D002767 4.2e-154 548.5 391 71.1
Lalb_Chr15g0077101 Lupinus albus HOM05D002553 ORTHO05D002767 4.7e-153 545.0 397 70.3
arahy.Tifrunner.gnm1.ann1.Y4B2Z0 Arachis hypogaea HOM05D002553 ORTHO05D002767 6.8e-152 541.2 416 67.1
TPR.G33193 Trifolium pratense HOM05D002553 ORTHO05D002767 3.7e-150 535.4 369 73.2
CiPaw.07G014700 Carya illinoinensis HOM05D002553 ORTHO05D002767 1.3e-123 447.2 418 57.2
Cfa006549 Carpinus fangiana HOM05D002553 ORTHO05D002767 1.9e-122 443.4 408 57.6
Haze_04234 Corylus avellana HOM05D002553 ORTHO05D002767 1.2e-119 434.1 403 57.6
CSS0035336 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 7.6e-119 431.4 404 55.9
RcHm_v2.0_Chr3g0454111 Rosa chinensis HOM05D002553 ORTHO05D002767 9.9e-119 431.0 393 57.0
FvH4_6g05341 Fragaria vesca HOM05D002553 ORTHO05D002767 1.3e-118 430.6 390 56.9
GSVIVG01000009001 Vitis vinifera HOM05D002553 ORTHO05D002767 1.3e-118 430.6 396 56.3
MD04G1209100 Malus domestica HOM05D002553 ORTHO05D002767 2.9e-118 429.5 396 56.6
TWI56G0412 Tripterygium wilfordii HOM05D002553 ORTHO05D002767 2.9e-118 429.5 395 55.9
FAN05G4192 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.4e-118 427.9 382 57.9
FAN05G5165 Fragaria x ananassa HOM05D002553 ORTHO05D002767 1.1e-117 427.6 382 57.3
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 1.3e-115 420.6 388 54.9
FAN02G2444 Fragaria x ananassa HOM05D002553 ORTHO05D002767 8.6e-115 417.9 393 55.5
QL03p004484 Quercus lobata HOM05D002553 ORTHO05D002767 3.3e-114 416.0 464 50.4
Potri.005G039000 Populus trichocarpa HOM05D002553 ORTHO05D002767 4.7e-113 412.1 422 52.1
Gorai.004G243500 Gossypium raimondii HOM05D002553 ORTHO05D002767 8.9e-112 407.9 401 54.4
Duzib177G0165 Durio zibethinus HOM05D002553 ORTHO05D002767 1.5e-111 407.1 413 52.5
Gohir.D08G229300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 2.9e-110 402.9 401 53.9
Atru.chr2.474 Acer truncatum HOM05D002553 ORTHO05D002767 4.9e-110 402.1 386 56.0
Thecc.05G308100 Theobroma cacao HOM05D002553 ORTHO05D002767 8.4e-110 401.4 414 52.9
Cc02_g32700 Coffea canephora HOM05D002553 ORTHO05D002767 5.4e-109 398.7 405 52.3
Prupe.6G330100 Prunus persica HOM05D002553 ORTHO05D002767 6.0e-108 395.2 346 60.1
Actinidia19805 Actinidia chinensis HOM05D002553 ORTHO05D002767 1.3e-107 394.0 402 52.2
Manes.09G163850 Manihot esculenta HOM05D002553 ORTHO05D002767 9.6e-106 387.9 430 50.7
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.6e-105 387.1 383 53.3
DCAR_029434 Daucus carota HOM05D002553 ORTHO05D002767 2.1e-105 386.7 411 51.3
FAN14G0929 Fragaria x ananassa HOM05D002553 ORTHO05D002767 4.5e-103 379.0 383 52.5
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 9.9e-103 377.9 385 53.0
Nitab4.5_0001510g0020 Nicotiana tabacum HOM05D002553 ORTHO05D002767 2.2e-102 376.7 409 49.4
CANSAT25G3036 Cannabis sativa HOM05D002553 ORTHO05D002767 2.9e-102 376.3 397 51.4
HanXRQChr14g0445961 Helianthus annuus HOM05D002553 ORTHO05D002767 1.1e-101 374.4 391 51.2
Nitab4.5_0000176g0030 Nicotiana tabacum HOM05D002553 ORTHO05D002767 1.9e-101 373.6 399 49.6
Sopen10g005180 Solanum pennellii HOM05D002553 ORTHO05D002767 2.4e-101 373.2 392 51.3
Solyc10g009400.3 Solanum lycopersicum HOM05D002553 ORTHO05D002767 4.2e-101 372.5 397 51.4
MSTRG.16234 Avicennia marina HOM05D002553 ORTHO05D002767 5.4e-101 372.1 395 52.4
Sc09g0003350 Simmondsia chinensis HOM05D002553 ORTHO05D002767 1.8e-99 367.1 386 51.0
Rhsim05G0144400 Rhododendron simsii HOM05D002553 ORTHO05D002767 1.1e-98 364.4 409 49.9
AL6G39610 Arabidopsis lyrata HOM05D002553 ORTHO05D002767 5.6e-98 362.1 387 50.9
Cpa.g.sc48.13 Carica papaya HOM05D002553 ORTHO05D002767 3.6e-97 359.4 349 53.6
Aqoxy1G02454 Aquilegia oxysepala HOM05D002553 ORTHO05D002767 6.2e-97 358.6 415 47.0
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 8.1e-97 358.2 389 50.4
ECA238G2267 Erigeron canadensis HOM05D002553 ORTHO05D002767 1.4e-96 357.5 396 49.7
Sabra05G0037600 Salix brachista HOM05D002553 ORTHO05D002767 2.4e-96 356.7 566 39.9
COL.COLO4_13516 Corchorus olitorius HOM05D002553 ORTHO05D002767 3.1e-96 356.3 344 53.8
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 3.1e-96 356.3 417 48.4
Migut.M00920 Erythranthe guttata HOM05D002553 ORTHO05D002767 1.5e-95 354.0 395 50.4
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 2.0e-95 353.6 416 48.1
Carub.0006s2514 Capsella rubella HOM05D002553 ORTHO05D002767 4.5e-95 352.4 385 49.1
BcaNung02464 Brassica carinata HOM05D002553 ORTHO05D002767 2.9e-94 349.7 389 49.4
AUR62000868 Chenopodium quinoa HOM05D002553 ORTHO05D002767 2.9e-94 349.7 394 50.8
Aa31LG11G9180 Aethionema arabicum HOM05D002553 ORTHO05D002767 4.9e-94 349.0 382 50.8
CARHR186000 Cardamine hirsuta HOM05D002553 ORTHO05D002767 2.4e-93 346.7 384 49.0
AT5G27400 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.2e-92 344.4 385 48.8
ClCG02G016020 Citrullus lanatus HOM05D002553 ORTHO05D002767 2.1e-92 343.6 421 47.7
Sp2g20630 Schrenkiella parvula HOM05D002553 ORTHO05D002767 1.3e-91 340.9 384 48.2
ATR0626G345 Amborella trichopoda HOM05D002553 ORTHO05D002767 1.8e-91 340.5 434 44.7
C07p40730 Brassica napus HOM05D002553 ORTHO05D002767 1.1e-90 337.8 383 49.1
BolC7t44601H Brassica oleracea HOM05D002553 ORTHO05D002767 1.1e-90 337.8 383 49.1
Thhalv10003627m.g Eutrema salsugineum HOM05D002553 ORTHO05D002767 1.5e-90 337.4 374 50.3
TAR633G1107 Trochodendron aralioides HOM05D002553 ORTHO05D002767 1.5e-90 337.4 374 50.0
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 9.6e-90 334.7 398 47.2
AT5G27410 Arabidopsis thaliana HOM05D002553 ORTHO05D002767 1.6e-89 334.0 373 49.1
Dinv40259 Davidia involucrata HOM05D002553 ORTHO05D002767 2.1e-89 333.6 313 56.5
Peaxi162Scf01441g00005 Petunia axillaris HOM05D002553 ORTHO05D002767 6.2e-89 332.0 502 41.0
A06p37580 Brassica napus HOM05D002553 ORTHO05D002767 1.8e-88 330.5 384 48.7
BraA06t26677Z Brassica rapa HOM05D002553 ORTHO05D002767 1.8e-88 330.5 384 48.7
SGA_v2.0_scaffold1G00162 Striga asiatica HOM05D002553 ORTHO05D002767 9.0e-88 328.2 396 48.7
Hund07046 Selenicereus undatus HOM05D002553 ORTHO05D002767 1.3e-86 324.3 391 48.8
Hma1.2p1_0666F.1_g199460 Hydrangea macrophylla HOM05D002553 ORTHO05D002767 2.5e-85 320.1 286 58.7
MBI17_g29610_MAGBIO Magnolia biondii HOM05D002553 ORTHO05D002767 1.0e-83 314.7 383 47.8
Lsat_1_v5_gn_2_67941 Lactuca sativa HOM05D002553 ORTHO05D002767 2.5e-82 310.1 394 44.4
Gohir.A08G212300 Gossypium hirsutum HOM05D002553 ORTHO05D002767 3.3e-82 309.7 308 53.9
AUR62005108 Chenopodium quinoa HOM05D002553 ORTHO05D002767 7.4e-82 308.5 341 51.6
Lj7C475G4 Lonicera japonica HOM05D002553 ORTHO05D002767 2.6e-79 300.1 387 44.2
Nn1g02088 Nelumbo nucifera HOM05D002553 ORTHO05D002767 1.2e-76 291.2 400 45.2
Oeu057684.1 Olea europaea HOM05D002553 ORTHO05D002767 2.5e-74 283.5 397 43.8
HPP92_017205 Vanilla planifolia HOM05D002553 ORTHO05D002767 9.1e-72 275.0 383 43.1
Zm00001eb417780 Zea mays HOM05D002553 ORTHO05D002767 7.7e-71 271.9 383 43.9
EL10Ac4g09309 Beta vulgaris HOM05D002553 ORTHO05D002767 2.5e-69 266.9 390 41.3
Glyma.03G240200 Glycine max HOM05D002553 ORTHO05D002767 4.4e-66 256.1 171 76.0
PGSC0003DMG400018888 Solanum tuberosum HOM05D002553 ORTHO05D002767 2.2e-57 227.3 404 39.9
Sed0024851 Sechium edule HOM05D002553 ORTHO05D002767 8.2e-57 225.3 287 47.7
Pp3c27_4830 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.8e-56 224.2 397 36.3
unitig_32.g11004 Utricularia gibba HOM05D002553 ORTHO05D002767 6.7e-51 205.7 407 35.4
Mapoly0153s0022 Marchantia polymorpha HOM05D002553 ORTHO05D002767 7.0e-48 195.7 398 33.2
SMO307G0066 Selaginella moellendorffii HOM05D002553 ORTHO05D002767 9.4e-45 185.3 388 31.2
vmacro19642 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 1.2e-44 184.9 231 45.5
vmacro19643 Vaccinium macrocarpon HOM05D002553 ORTHO05D002767 1.3e-33 148.3 194 44.3
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 1.3e-30 138.3 345 30.4
CSS0010777 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 3.4e-26 123.6 101 61.4
CAN.G271.6 Capsicum annuum HOM05D000541 ORTHO05D000137 1.1e-24 118.6 173 41.6
CSS0028745 Camellia sinensis var. sinensis HOM05D002553 ORTHO05D002767 2.5e-21 107.5 141 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1399 Anthoceros agrestis HOM05D002553 ORTHO05D002767 4.9e-17 93.2 182 34.1
CBR_g66786 Chara braunii HOM05D002553 ORTHO05D002767 1.1e-16 92.0 212 30.2
SEGI_18575 Sequoiadendron giganteum HOM05D002553 ORTHO05D002767 1.4e-16 91.7 163 38.0
CAN.G271.7 Capsicum annuum HOM05D002553 ORTHO05D002767 3.9e-14 83.6 98 45.9
SalBow8G2918 Salvia bowleyana HOM05D002553 ORTHO05D002767 7.3e-13 79.3 176 34.1
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 9.5e-13 79.0 152 36.8
Os05g0143200 Oryza sativa ssp. japonica HOM05D002553 ORTHO05D002767 5.8e-10 69.7 81 42.0
MCO08G105 Micromonas commoda HOM05D002553 ORTHO05D002767 9.9e-10 68.9 178 27.5
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 8.3e-09 65.9 164 28.0
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 1.9e-08 64.7 164 29.9
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.9e-08 64.7 164 29.9
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 1.9e-08 64.7 164 29.9
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.9e-08 64.7 164 28.7
Hma1.2p1_0816F.1_g223000 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 2.4e-08 64.3 146 35.6
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.2e-08 63.9 164 29.9
C06p34070 Brassica napus HOM05D001602 ORTHO05D001470 4.1e-08 63.5 158 31.0
BolC6t38522H Brassica oleracea HOM05D001602 ORTHO05D001470 4.1e-08 63.5 158 31.0
BcaC08g45650 Brassica carinata HOM05D001602 ORTHO05D001470 7.1e-08 62.8 158 31.0
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 7.1e-08 62.8 164 28.0
A07p29850 Brassica napus HOM05D001602 ORTHO05D001470 9.2e-08 62.4 158 31.0
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 9.2e-08 62.4 158 31.0
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.2e-07 62.0 164 28.7
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 1.2e-07 62.0 164 29.3
Carub.0002s2007 Capsella rubella HOM05D001602 ORTHO05D001470 1.6e-07 61.6 158 30.4
AL2G33080 Arabidopsis lyrata HOM05D001602 ORTHO05D001470 2.1e-07 61.2 158 30.4
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 3.5e-07 60.5 164 28.0
AT1G73320 Arabidopsis thaliana HOM05D001602 ORTHO05D001470 6.0e-07 59.7 158 29.7
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 7.8e-07 59.3 134 30.6
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 7.8e-07 59.3 134 30.6
Haze_18406 Corylus avellana HOM05D000219 ORTHO05D000226 1.0e-06 58.9 158 32.3
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 1.0e-06 58.9 131 30.5
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 1.3e-06 58.5 134 29.9
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 1.3e-06 58.5 158 29.7
Pp3c10_13020 Physcomitrium patens HOM05D001602 ORTHO05D001470 1.3e-06 58.5 163 29.4
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.7e-06 58.2 132 28.8
Ciclev10033731m.g Citrus clementina HOM05D001602 ORTHO05D001470 1.7e-06 58.2 121 30.6
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.7e-06 58.2 132 28.8
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.7e-06 58.2 136 30.1
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 1.7e-06 58.2 119 31.9
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 2.3e-06 57.8 164 26.2
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 2.3e-06 57.8 158 29.1
Sp5g28250 Schrenkiella parvula HOM05D001602 ORTHO05D001470 2.3e-06 57.8 158 29.1
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 2.3e-06 57.8 164 26.8
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 3.0e-06 57.4 134 29.9
Mapoly0019s0025 Marchantia polymorpha HOM05D014140 ORTHO05D015854 3.9e-06 57.0 76 38.2
TWI81G0159 Tripterygium wilfordii HOM05D001602 ORTHO05D001470 3.9e-06 57.0 135 31.9
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 5.1e-06 56.6 134 31.3
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 5.1e-06 56.6 129 28.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 8.6e-06 55.8 81 39.5
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 8.6e-06 55.8 132 28.8
Hma1.2p1_0414F.1_g147600 Hydrangea macrophylla HOM05D001602 ORTHO05D001470 8.6e-06 55.8 135 30.4
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 8.6e-06 55.8 167 26.3


User provided reference genes

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