Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G088300 Phaseolus vulgaris HOM05D007682 ORTHO05D009690 2.3e-38 162.9 184 100.0
Glyma.19G231600 Glycine max HOM05D007682 ORTHO05D009690 9.7e-29 131.0 102 90.2
Glyma.03G234200 Glycine max HOM05D007682 ORTHO05D009690 1.3e-25 120.6 67 95.5
Haze_04118 Corylus avellana HOM05D007682 ORTHO05D009690 8.5e-25 117.9 78 79.5
Psat3g011680 Pisum sativum HOM05D007682 ORTHO05D009690 4.2e-24 115.5 71 87.3
TPR.G1619 Trifolium pratense HOM05D007682 ORTHO05D009690 5.5e-24 115.2 71 85.9
Lalb_Chr15g0077471 Lupinus albus HOM05D007682 ORTHO05D009690 1.6e-23 113.6 102 82.4
PGR031G1366 Punica granatum HOM05D007682 ORTHO05D009690 7.9e-23 111.3 71 81.7
arahy.Tifrunner.gnm1.ann1.P6132C Arachis hypogaea HOM05D007682 ORTHO05D009690 3.0e-22 109.4 65 87.7
Prupe.8G021600 Prunus persica HOM05D007682 ORTHO05D009690 3.0e-22 109.4 64 90.6
Medtr7g112600 Medicago truncatula HOM05D007682 ORTHO05D009690 3.9e-22 109.0 102 76.5
arahy.Tifrunner.gnm1.ann1.S47DRU Arachis hypogaea HOM05D007682 ORTHO05D009690 1.5e-21 107.1 65 86.2
Potri.005G023000 Populus trichocarpa HOM05D007682 ORTHO05D009690 2.5e-21 106.3 65 87.7
RcHm_v2.0_Chr6g0276771 Rosa chinensis HOM05D007682 ORTHO05D009690 4.3e-21 105.5 62 88.7
Gohir.A08G208100 Gossypium hirsutum HOM05D007682 ORTHO05D009690 5.7e-21 105.1 62 88.7
TAR633G0769 Trochodendron aralioides HOM05D007682 ORTHO05D009690 7.4e-21 104.8 65 84.6
Gorai.007G301900 Gossypium raimondii HOM05D007682 ORTHO05D009690 9.7e-21 104.4 62 88.7
HanXRQChr11g0340111 Helianthus annuus HOM05D007682 ORTHO05D009690 9.7e-21 104.4 77 75.3
FAN20G0672 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.3e-20 104.0 62 87.1
FAN24G1339 Fragaria x ananassa HOM05D007682 ORTHO05D009690 1.3e-20 104.0 62 87.1
Manes.08G115600 Manihot esculenta HOM05D007682 ORTHO05D009690 1.7e-20 103.6 61 90.2
Eucgr.H03256 Eucalyptus grandis HOM05D007682 ORTHO05D009690 2.2e-20 103.2 67 80.6
Hma1.2p1_0472F.1_g159680 Hydrangea macrophylla HOM05D007682 ORTHO05D009690 2.2e-20 103.2 62 87.1
Gohir.D11G279700 Gossypium hirsutum HOM05D007682 ORTHO05D009690 2.8e-20 102.8 62 87.1
Gohir.A11G269500 Gossypium hirsutum HOM05D007682 ORTHO05D009690 3.7e-20 102.4 62 87.1
Gohir.D08G224900 Gossypium hirsutum HOM05D007682 ORTHO05D009690 4.8e-20 102.1 62 85.5
MD10G1017700 Malus domestica HOM05D007682 ORTHO05D009690 4.8e-20 102.1 62 87.1
Sabra05G0029000 Salix brachista HOM05D007682 ORTHO05D009690 4.8e-20 102.1 62 88.7
Thecc.05G315600 Theobroma cacao HOM05D007682 ORTHO05D009690 6.3e-20 101.7 62 87.1
Gorai.004G238900 Gossypium raimondii HOM05D007682 ORTHO05D009690 8.2e-20 101.3 62 85.5
Lj1g0016295 Lotus japonicus HOM05D007682 ORTHO05D009690 8.2e-20 101.3 69 82.6
Nn4g25761 Nelumbo nucifera HOM05D007682 ORTHO05D009690 8.2e-20 101.3 62 83.9
CSS0049840 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 1.1e-19 100.9 62 83.9
Nitab4.5_0003113g0070 Nicotiana tabacum HOM05D007682 ORTHO05D009690 1.4e-19 100.5 61 86.9
Actinidia21502 Actinidia chinensis HOM05D007682 ORTHO05D009690 1.8e-19 100.1 62 83.9
PSO407G0292 Papaver somniferum HOM05D007682 ORTHO05D009690 1.8e-19 100.1 61 85.2
THA.LOC104818730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 2.4e-19 99.8 64 82.8
Atru.chr2.100 Acer truncatum HOM05D007682 ORTHO05D009690 3.1e-19 99.4 65 83.1
CAN.G1273.42 Capsicum annuum HOM05D007682 ORTHO05D009690 3.1e-19 99.4 59 88.1
FAN15G0817 Fragaria x ananassa HOM05D007682 ORTHO05D009690 3.1e-19 99.4 62 83.9
Peaxi162Scf00037g01515 Petunia axillaris HOM05D007682 ORTHO05D009690 3.1e-19 99.4 61 85.2
Solyc01g099930.3 Solanum lycopersicum HOM05D007682 ORTHO05D009690 3.1e-19 99.4 66 84.8
Lsat_1_v5_gn_7_72960 Lactuca sativa HOM05D007682 ORTHO05D009690 4.1e-19 99.0 68 80.9
PSO170G1207 Papaver somniferum HOM05D007682 ORTHO05D009690 4.1e-19 99.0 61 83.6
THA.LOC104821730 Tarenaya hassleriana HOM05D007682 ORTHO05D009690 4.1e-19 99.0 62 83.9
SGA_v2.0_scaffold81G26104 Striga asiatica HOM05D007682 ORTHO05D009690 5.3e-19 98.6 69 78.3
Duzib177G0692 Durio zibethinus HOM05D007682 ORTHO05D009690 6.9e-19 98.2 59 88.1
QL03p019528 Quercus lobata HOM05D007682 ORTHO05D009690 6.9e-19 98.2 63 79.4
Oeu010924.1 Olea europaea HOM05D007682 ORTHO05D009690 9.1e-19 97.8 61 83.6
Os12g0554000 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.2e-18 97.4 65 76.9
Cc02_g34370 Coffea canephora HOM05D007682 ORTHO05D009690 1.5e-18 97.1 59 84.7
Os12g0516700 Oryza sativa ssp. japonica HOM05D007682 ORTHO05D009690 1.5e-18 97.1 65 75.4
GSVIVG01031165001 Vitis vinifera HOM05D000036 ORTHO05D000441 1.5e-18 97.1 61 83.6
Cfa006654 Carpinus fangiana HOM05D007682 ORTHO05D009690 2.6e-18 96.3 64 79.7
Sc16g0008750 Simmondsia chinensis HOM05D000036 ORTHO05D001038 3.4e-18 95.9 62 80.6
TWI56G1223 Tripterygium wilfordii HOM05D007682 ORTHO05D009690 3.4e-18 95.9 61 82.0
CiPaw.08G159600 Carya illinoinensis HOM05D007682 ORTHO05D009690 4.5e-18 95.5 62 79.0
CDE05G1347 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 4.5e-18 95.5 58 84.5
Sed0011876 Sechium edule HOM05D007682 ORTHO05D009690 4.5e-18 95.5 62 79.0
HPP92_010663 Vanilla planifolia HOM05D007682 ORTHO05D009690 4.5e-18 95.5 71 78.9
Dinv30837 Davidia involucrata HOM05D007682 ORTHO05D009690 7.7e-18 94.7 62 79.0
ECA236G4368 Erigeron canadensis HOM05D000036 ORTHO05D000441 7.7e-18 94.7 62 79.0
Sp2g20980 Schrenkiella parvula HOM05D007682 ORTHO05D009690 7.7e-18 94.7 59 83.1
AUR62000737 Chenopodium quinoa HOM05D007682 ORTHO05D009690 1.0e-17 94.4 62 77.4
DCAR_022138 Daucus carota HOM05D007682 ORTHO05D009690 1.0e-17 94.4 66 74.2
A06p37270 Brassica napus HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 81.4
C07p41180 Brassica napus HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 81.4
BolC7t44646H Brassica oleracea HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 81.4
BraA06t26650Z Brassica rapa HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 81.4
CARHR186340 Cardamine hirsuta HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 83.1
SEGI_39810 Sequoiadendron giganteum HOM05D007682 ORTHO05D009690 1.3e-17 94.0 59 79.7
Aa31LG11G9610 Aethionema arabicum HOM05D007682 ORTHO05D009690 1.7e-17 93.6 59 81.4
CDE11G0615 Ceratophyllum demersum HOM05D007682 ORTHO05D009690 1.7e-17 93.6 61 78.7
BcaNung04745 Brassica carinata HOM05D007682 ORTHO05D009690 2.9e-17 92.8 59 79.7
CsaV3_1G038640 Cucumis sativus L. HOM05D007682 ORTHO05D009690 2.9e-17 92.8 61 78.7
AT5G27860 Arabidopsis thaliana HOM05D007682 ORTHO05D009690 3.8e-17 92.4 59 81.4
MSTRG.27972 Avicennia marina HOM05D007682 ORTHO05D009690 3.8e-17 92.4 59 79.7
AUR62005227 Chenopodium quinoa HOM05D007682 ORTHO05D009690 5.0e-17 92.0 62 74.2
Migut.N02098 Erythranthe guttata HOM05D007682 ORTHO05D009690 8.5e-17 91.3 61 77.0
SMO367G0406 Selaginella moellendorffii HOM05D007682 ORTHO05D009690 4.2e-16 89.0 77 66.2
CSS0031357 Camellia sinensis var. sinensis HOM05D007682 ORTHO05D009690 5.5e-16 88.6 66 71.2
Nitab4.5_0003497g0050 Nicotiana tabacum HOM05D007682 ORTHO05D009690 5.5e-16 88.6 61 77.0
Zm00001eb410110 Zea mays HOM05D007682 ORTHO05D009690 9.4e-16 87.8 63 74.6
AL6G39080 Arabidopsis lyrata HOM05D007682 ORTHO05D009690 1.0e-14 84.3 59 76.3
Hund07111 Selenicereus undatus HOM05D007682 ORTHO05D009690 1.4e-14 84.0 86 59.3
MBI19_g44105_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 1.8e-14 83.6 54 79.6
Ah.06g189950 Amaranthus hybridus HOM05D007682 ORTHO05D009690 1.1e-13 80.9 51 80.4
EL10Ac4g09894 Beta vulgaris HOM05D007682 ORTHO05D009690 2.6e-13 79.7 51 78.4
ATR0693G225 Amborella trichopoda HOM05D007682 ORTHO05D009690 5.7e-13 78.6 52 76.9
unitig_699.g19250 Utricularia gibba HOM05D007682 ORTHO05D009690 2.2e-12 76.6 86 53.5
HPP92_010684 Vanilla planifolia HOM05D007682 ORTHO05D009690 4.8e-12 75.5 53 79.2
DCAR_022140 Daucus carota HOM05D007682 ORTHO05D009690 1.4e-11 73.9 55 69.1
MBI19_g47767_MAGBIO Magnolia biondii HOM05D007682 ORTHO05D009690 2.2e-09 66.6 54 68.5
VMungo0540G1787 Vigna mungo HOM05D007682 ORTHO05D009690 6.5e-09 65.1 35 91.4
FvH4_2g14440 Fragaria vesca HOM05D007682 ORTHO05D009690 2.7e-07 59.7 35 82.9


User provided reference genes

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