Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 6.6e-36 153.3 67 100.0
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 7.6e-24 113.2 50 94.0
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.7e-23 112.1 50 92.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 1.7e-23 112.1 50 94.0
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 1.7e-23 112.1 50 94.0
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 1.7e-23 112.1 50 92.0
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 2.2e-23 111.7 50 92.0
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 4.9e-23 110.5 50 94.0
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 4.9e-23 110.5 50 92.0
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 4.9e-23 110.5 50 92.0
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 4.9e-23 110.5 50 92.0
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.9e-23 110.5 50 90.0
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 6.4e-23 110.2 50 90.0
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 8.4e-23 109.8 50 90.0
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.4e-22 109.0 50 88.0
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.9e-22 108.6 50 90.0
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 1.9e-22 108.6 50 88.0
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.4e-22 108.2 63 74.6
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 2.4e-22 108.2 50 86.0
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 3.2e-22 107.8 50 88.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 3.2e-22 107.8 50 86.0
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 3.2e-22 107.8 50 86.0
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 4.2e-22 107.5 50 88.0
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 4.2e-22 107.5 50 88.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 4.2e-22 107.5 50 90.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 4.2e-22 107.5 50 88.0
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 4.2e-22 107.5 50 86.0
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 5.4e-22 107.1 55 85.5
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 5.4e-22 107.1 50 90.0
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 7.1e-22 106.7 50 86.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 7.1e-22 106.7 72 66.7
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 7.1e-22 106.7 50 86.0
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 84.0
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 84.0
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 86.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 86.0
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 86.0
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 9.3e-22 106.3 50 86.0
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 84.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 86.0
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 86.0
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 86.0
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 86.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 86.0
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 84.0
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 1.6e-21 105.5 50 82.0
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 84.0
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 84.0
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 84.0
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 84.0
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 86.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.1e-21 105.1 50 86.0
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 82.0
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 82.0
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 82.0
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 84.0
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 82.0
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 84.0
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 2.7e-21 104.8 50 84.0
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 3.5e-21 104.4 50 84.0
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 3.5e-21 104.4 50 78.0
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 82.0
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 82.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 82.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 82.0
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 84.0
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 84.0
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 86.0
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 84.0
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 4.6e-21 104.0 54 72.2
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 4.6e-21 104.0 50 86.0
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 6.0e-21 103.6 50 80.0
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 6.0e-21 103.6 50 82.0
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 7.9e-21 103.2 50 82.0
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 7.9e-21 103.2 50 78.0
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.0e-20 102.8 50 80.0
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 1.0e-20 102.8 50 82.0
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.3e-20 102.4 50 78.0
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 78.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 80.0
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 80.0
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 82.0
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 78.0
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 1.8e-20 102.1 50 78.0
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 3.0e-20 101.3 50 80.0
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 6.7e-20 100.1 50 74.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 6.7e-20 100.1 50 74.0
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 6.7e-20 100.1 50 74.0
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 8.7e-20 99.8 50 80.0
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.1e-19 99.4 50 78.0
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 3.3e-19 97.8 51 76.5
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 4.3e-19 97.4 50 76.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 4.3e-19 97.4 50 76.0
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 4.3e-19 97.4 50 76.0
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 4.3e-19 97.4 50 76.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 5.6e-19 97.1 50 76.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 5.6e-19 97.1 50 76.0
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 2.8e-18 94.7 54 68.5
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 2.8e-18 94.7 54 68.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.8e-18 94.7 50 80.0
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.8e-18 94.7 50 80.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 3.6e-18 94.4 53 69.8
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-17 92.4 64 60.9
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.8e-17 92.0 50 76.0
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.8e-17 92.0 50 76.0
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.6e-16 88.2 50 72.0
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 9.9e-16 86.3 39 87.2
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 9.9e-16 86.3 50 74.0
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 1.3e-15 85.9 47 72.3
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 6.4e-15 83.6 50 66.0
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 3.2e-14 81.3 39 82.1
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 4.2e-14 80.9 39 82.1
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 4.2e-14 80.9 47 68.1
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.5e-14 80.5 39 82.1
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 7.1e-14 80.1 36 88.9
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 1.6e-13 79.0 43 74.4
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.5e-13 77.8 36 86.1
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 4.6e-13 77.4 39 74.4
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 6.0e-13 77.0 39 79.5
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 6.0e-13 77.0 39 79.5
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.0e-12 76.3 36 83.3
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.0e-12 76.3 38 84.2
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.0e-12 76.3 38 81.6
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.8e-12 75.5 41 80.5
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.3e-12 75.1 41 78.0
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.3e-12 75.1 37 81.1
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 3.9e-12 74.3 36 83.3
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 5.1e-12 73.9 37 78.4
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 6.7e-12 73.6 36 77.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.3e-11 71.2 39 71.8
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.3e-10 69.3 36 77.8
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 4.0e-09 64.3 35 68.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 3.2e-06 54.7 24 87.5
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 4.2e-06 54.3 36 61.1


User provided reference genes

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