Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.1e-292 1009.2 526 100.0
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 5.0e-280 967.2 529 95.5
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 3.7e-267 924.5 536 89.6
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.6e-265 919.1 526 89.7
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 2.3e-264 915.2 531 89.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.3e-264 915.2 528 89.4
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 8.6e-264 913.3 526 91.8
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.0e-261 906.4 548 85.9
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.6e-260 901.7 552 85.3
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.6e-260 901.7 540 85.9
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.3e-259 899.4 520 89.0
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 1.4e-250 869.4 529 83.9
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 4.1e-250 867.8 526 84.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.3e-248 862.8 531 82.5
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 1.9e-247 859.0 526 84.2
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.9e-247 859.0 500 87.0
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 6.2e-246 854.0 526 83.8
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 4.0e-245 851.3 513 86.0
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.5e-244 849.4 526 83.1
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 2.0e-244 849.0 526 82.5
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 2.6e-244 848.6 539 82.4
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 7.5e-244 847.0 526 82.3
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 3.7e-243 844.7 542 81.2
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 3.2e-242 841.6 525 81.5
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 4.1e-242 841.3 515 83.9
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 5.4e-242 840.9 512 84.8
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 7.8e-241 837.0 526 80.8
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.0e-240 836.6 528 81.4
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.9e-240 834.7 528 81.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.1e-239 833.2 533 81.2
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.5e-239 832.8 536 80.6
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 7.3e-239 830.5 539 78.8
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 7.3e-239 830.5 529 80.0
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-238 828.2 529 79.6
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 1.1e-237 826.6 522 81.2
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.5e-236 822.8 502 83.9
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 4.9e-235 817.8 524 80.5
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 2.4e-234 815.5 515 81.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 2.7e-233 812.0 537 78.0
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 4.6e-233 811.2 501 81.8
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.9e-232 808.1 519 78.6
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 5.1e-232 807.7 519 80.0
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 8.7e-232 807.0 503 81.3
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.3e-231 803.9 533 78.0
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 2.9e-227 792.0 542 75.8
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 4.9e-227 791.2 504 79.4
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.4e-226 789.6 503 79.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.9e-226 789.3 514 81.5
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.2e-225 786.6 546 75.1
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.6e-225 786.2 519 78.6
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.0e-224 783.5 526 78.5
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.3e-224 783.1 501 78.8
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.7e-224 782.7 501 78.8
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.3e-224 782.3 513 78.6
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 3.0e-224 781.9 515 75.7
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 3.9e-224 781.6 501 78.6
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.1e-224 781.2 519 78.0
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 6.6e-224 780.8 519 77.8
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.1e-222 775.8 504 78.8
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.1e-221 773.5 504 78.2
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.4e-221 772.3 527 76.3
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 9.0e-221 770.4 531 75.9
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 4.5e-220 768.1 533 75.2
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 4.5e-220 768.1 541 73.8
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.9e-218 762.7 549 72.5
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.9e-218 762.7 541 73.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.9e-217 757.3 539 73.7
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.9e-216 755.0 504 76.8
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 5.1e-216 754.6 538 73.6
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 6.7e-216 754.2 564 71.5
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.1e-215 753.4 535 74.4
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 4.3e-215 751.5 530 74.2
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 7.4e-215 750.7 472 81.8
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.1e-213 746.9 502 76.1
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 4.0e-213 745.0 547 72.0
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 4.0e-213 745.0 554 71.5
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 1.5e-212 743.0 501 76.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 2.0e-212 742.7 535 73.3
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.5e-210 735.7 527 73.2
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.2e-210 735.3 502 76.3
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 4.2e-210 734.9 624 65.4
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 7.1e-210 734.2 541 71.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.7e-208 727.2 610 65.2
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.8e-197 693.0 518 69.5
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 2.6e-196 689.1 491 72.3
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.0e-195 687.2 535 69.7
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 3.8e-195 685.3 502 69.9
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.1e-194 683.7 500 72.0
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.1e-192 674.9 592 63.3
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.5e-191 672.5 556 65.5
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.2e-188 663.7 501 67.1
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.1e-186 657.1 424 80.0
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.9e-186 656.4 456 75.4
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.0e-176 622.5 495 63.6
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 3.0e-176 622.5 495 63.6
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.0e-175 619.8 469 70.6
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 5.3e-173 611.7 475 66.9
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.4e-165 586.3 373 78.8
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 4.7e-161 572.0 517 57.4
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 2.6e-159 566.2 487 60.6
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.0e-156 556.6 361 80.6
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.8e-152 543.5 362 78.2
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 5.2e-152 542.0 360 75.8
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.3e-142 510.8 339 77.6
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.1e-130 471.1 322 75.5
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.6e-121 439.5 249 86.3
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.4e-119 433.0 249 85.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.3e-115 421.0 454 57.5
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.7e-107 394.0 509 44.6
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.1e-101 374.8 240 79.2
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 5.5e-101 372.5 493 43.4
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.3e-89 334.7 490 40.8
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.6e-76 291.2 331 53.2
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 3.0e-75 287.0 173 82.1
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-58 229.6 503 36.0
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 1.5e-53 214.9 248 52.4
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 2.1e-52 211.1 490 36.1
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 8.3e-49 199.1 504 32.9
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 5.4e-48 196.4 118 82.2
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-43 181.8 294 43.5
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 3.0e-43 180.6 115 80.9
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 6.3e-41 172.9 466 33.9
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-36 156.8 468 32.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 2.3e-35 154.5 468 31.8
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-32 144.4 293 38.9
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-32 144.1 289 39.8
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 3.0e-30 137.5 331 36.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 8.0e-28 129.4 302 33.8
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.2e-27 126.7 210 41.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 8.9e-27 125.9 86 66.3
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 7.5e-26 122.9 238 39.9
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.9e-25 120.9 367 32.4
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-24 117.5 158 42.4
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-22 112.5 158 41.1
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.7e-22 111.7 275 32.0
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 3.9e-22 110.5 209 39.7
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 7.3e-21 106.3 208 39.9
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 1.8e-19 101.7 304 30.6
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 5.2e-19 100.1 353 32.6
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.2e-19 100.1 358 30.2
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 2.0e-18 98.2 239 33.1
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.6e-18 97.8 74 62.2
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 3.4e-18 97.4 353 32.3
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 9.8e-18 95.9 59 71.2
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 3.9e-14 84.0 326 29.4
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 6.2e-12 76.6 289 31.5
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-10 72.4 158 36.1
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 1.0e-06 59.3 32 84.4


User provided reference genes

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