Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.2e-92 343.2 180 100.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 5.1e-83 311.2 180 91.1
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 2.8e-73 278.9 191 82.2
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 6.9e-72 274.2 188 79.8
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.2e-54 216.1 181 69.1
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 3.8e-54 215.3 180 71.1
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 4.7e-52 208.4 165 71.5
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 6.1e-52 208.0 177 67.2
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 5.7e-50 201.4 182 65.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 6.8e-35 151.4 199 53.3
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 8.8e-35 151.0 210 51.0
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.6e-34 149.4 188 54.3
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 2.8e-33 146.0 189 52.9
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.9e-30 136.0 193 50.3
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 7.2e-29 131.3 170 52.9
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.2e-28 130.6 184 46.7
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.7e-28 128.6 197 47.2
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-27 127.1 191 47.1
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.0e-27 125.9 177 52.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 3.0e-27 125.9 191 47.1
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.0e-27 125.9 181 48.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 4.0e-27 125.6 187 45.5
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.2e-27 125.2 185 49.2
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.8e-27 124.4 185 49.2
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.2e-26 124.0 184 45.7
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.2e-26 124.0 185 49.2
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.5e-26 123.6 181 47.0
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.4e-26 122.5 191 45.0
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 3.4e-26 122.5 194 45.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.4e-26 122.5 205 44.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 9.8e-26 120.9 190 42.1
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.3e-25 120.6 155 52.3
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.3e-25 120.6 198 45.5
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 2.2e-25 119.8 181 45.9
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 3.7e-25 119.0 170 47.6
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.9e-25 118.6 179 46.4
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 8.3e-25 117.9 179 44.7
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 8.3e-25 117.9 165 45.5
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.1e-24 117.5 187 44.4
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.8e-24 116.7 185 45.4
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.1e-24 115.9 176 48.3
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 5.4e-24 115.2 181 45.9
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.4e-24 115.2 162 47.5
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 7.0e-24 114.8 186 46.2
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 9.2e-24 114.4 189 46.6
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.2e-23 114.0 187 44.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.2e-23 114.0 162 47.5
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.6e-23 113.6 162 46.9
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-23 112.5 181 44.8
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 4.5e-23 112.1 170 42.9
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 4.5e-23 112.1 184 45.1
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.3e-22 109.8 190 44.2
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-22 109.4 173 46.2
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.9e-22 109.4 188 44.1
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 5.0e-22 108.6 170 47.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.1e-21 107.5 170 45.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.5e-21 107.1 190 42.1
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.9e-21 106.7 169 46.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.9e-21 106.7 178 42.7
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 5.6e-21 105.1 182 41.2
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.6e-20 103.6 176 44.3
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 1.6e-20 103.6 107 59.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.1e-20 103.2 168 45.8
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.1e-20 103.2 168 45.8
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 2.8e-20 102.8 197 40.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 2.8e-20 102.8 197 40.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 3.6e-20 102.4 182 40.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 3.6e-20 102.4 171 41.5
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 8.0e-20 101.3 179 40.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 8.0e-20 101.3 179 40.2
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.3e-19 99.8 181 40.3
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 5.2e-19 98.6 171 40.9
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 6.8e-19 98.2 167 41.3
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 6.8e-19 98.2 167 41.3
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 6.8e-19 98.2 167 46.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.2e-18 97.4 172 41.3
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-18 97.4 198 38.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.0e-18 96.7 232 34.9
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 2.0e-18 96.7 189 40.2
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.6e-18 96.3 183 40.4
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 3.4e-18 95.9 163 42.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 4.4e-18 95.5 169 42.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.4e-18 95.5 176 43.8
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 7.5e-18 94.7 209 37.8
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.3e-17 94.0 195 40.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 1.7e-17 93.6 185 40.0
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.9e-17 92.8 170 43.5
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.9e-17 92.0 198 42.9
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 6.4e-17 91.7 137 46.7
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 8.3e-17 91.3 139 48.2
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.4e-16 90.5 174 39.1
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.4e-16 90.5 213 38.0
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.8e-16 90.1 179 40.2
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 9.2e-16 87.8 214 37.9
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.0e-15 86.7 155 38.1
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 2.0e-15 86.7 166 39.8
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.7e-15 86.3 156 42.9
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.7e-15 86.3 164 39.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.7e-15 86.3 197 38.1
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.7e-15 86.3 205 36.6
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.5e-15 85.9 182 40.1
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 3.5e-15 85.9 196 35.7
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 4.6e-15 85.5 181 38.1
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 5.9e-15 85.1 194 39.2
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.9e-15 85.1 179 37.4
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 7.8e-15 84.7 85 56.5
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.7e-14 83.6 97 52.6
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.7e-14 83.6 185 35.7
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.3e-14 83.2 194 36.6
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.0e-14 82.8 183 39.3
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 3.0e-14 82.8 205 35.6
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.9e-14 82.4 211 35.1
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 8.6e-14 81.3 205 35.1
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-13 80.9 184 38.6
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 1.1e-13 80.9 193 37.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.5e-13 80.5 162 38.3
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.5e-13 79.7 108 43.5
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 3.3e-13 79.3 128 43.0
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 4.3e-13 79.0 175 33.1
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 7.3e-13 78.2 69 59.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.3e-13 78.2 84 53.6
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.3e-13 78.2 84 53.6
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.6e-12 77.0 199 38.2
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.6e-12 77.0 192 37.0
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.6e-12 75.9 67 59.7
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.7e-12 75.5 180 37.2
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.7e-12 75.5 182 37.4
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 8.0e-12 74.7 71 52.1
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-11 74.3 177 36.2
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 1.1e-11 74.3 181 36.5
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.4e-11 73.9 200 35.0
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.4e-11 73.9 187 33.7
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 1.4e-11 73.9 171 35.7
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.8e-11 73.6 167 37.7
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 3.1e-11 72.8 75 54.7
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 3.1e-11 72.8 183 30.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 8.9e-11 71.2 189 34.9
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 8.9e-11 71.2 197 37.1
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.2e-10 70.9 194 31.4
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 3.4e-10 69.3 184 34.8
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 5.8e-10 68.6 152 40.1
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.3e-09 67.4 70 51.4
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.7e-09 67.0 186 33.3
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.9e-09 66.2 207 33.8
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.9e-09 66.2 147 34.7
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.9e-08 63.5 56 62.5
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 5.4e-08 62.0 82 50.0
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-07 60.8 124 36.3
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 2.3e-06 56.6 54 53.7
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 3.0e-06 56.2 203 33.0


User provided reference genes

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