Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 0.0e+00 1227.6 719 100.0
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 4.0e-304 1047.7 720 88.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 6.9e-264 914.1 733 78.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 6.2e-249 864.4 744 74.6
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-180 636.0 740 61.9
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 5.4e-168 595.5 745 54.9
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.1e-164 583.6 732 57.2
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 9.3e-152 541.6 788 53.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 7.3e-149 531.9 777 54.3
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.8e-148 529.3 788 53.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.9e-147 525.4 737 52.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.1e-144 518.1 657 55.7
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.5e-141 506.9 745 50.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 7.4e-141 505.4 769 51.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.1e-140 503.8 793 51.5
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.0e-138 497.3 801 50.8
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 5.7e-133 479.2 794 50.8
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 5.7e-133 479.2 631 53.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.5e-125 454.5 663 55.4
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.7e-125 452.6 785 52.2
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 5.9e-122 442.6 752 47.6
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.3e-121 441.4 749 47.4
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.9e-120 437.6 752 47.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.0e-117 427.6 806 46.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.5e-117 427.2 641 49.0
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 4.3e-117 426.4 780 44.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 7.4e-117 425.6 781 46.9
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 9.1e-115 418.7 713 51.1
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.4e-112 408.7 797 48.4
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.4e-110 404.8 787 45.6
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 3.9e-110 403.3 781 49.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 3.9e-110 403.3 769 46.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 6.7e-110 402.5 668 49.4
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 8.8e-110 402.1 785 48.7
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 5.7e-109 399.4 783 44.8
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 9.7e-109 398.7 697 49.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.7e-108 397.9 675 48.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 1.7e-108 397.9 796 44.8
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.2e-108 395.6 770 44.9
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.2e-108 395.6 770 44.9
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 8.2e-108 395.6 761 48.6
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.4e-107 394.8 786 43.8
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.8e-107 394.4 787 47.6
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.1e-107 393.7 772 45.2
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 1.7e-105 387.9 697 49.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 3.8e-105 386.7 678 47.9
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.5e-104 382.9 771 44.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.1e-103 380.9 774 48.8
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.3e-102 377.5 781 47.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.7e-102 375.9 735 45.6
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.1e-99 368.6 315 72.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.6e-98 364.8 674 46.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.9e-98 362.8 755 47.4
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 5.0e-97 359.8 755 44.5
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.8e-92 343.2 678 43.1
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.4e-91 341.7 783 44.6
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-90 338.2 687 44.8
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.5e-90 337.0 686 42.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.3e-89 335.1 762 40.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.6e-87 328.2 685 45.0
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 2.0e-85 321.2 797 43.7
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 2.6e-85 320.9 687 45.9
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 4.9e-84 316.6 704 45.6
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.8e-81 307.0 758 44.5
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.8e-79 300.8 694 44.4
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.6e-79 300.4 636 41.7
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.0e-78 297.4 700 40.6
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.2e-77 295.4 731 44.7
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 2.0e-77 294.7 683 46.9
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 5.7e-77 293.1 752 38.6
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.4e-75 288.5 682 46.9
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.4e-75 287.7 688 43.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.1e-72 278.9 614 44.3
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.5e-72 277.7 630 43.7
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.5e-72 277.7 672 43.5
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 9.5e-72 275.8 767 43.4
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.2e-71 275.4 746 42.9
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.1e-70 270.8 680 41.9
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 1.5e-69 268.5 741 38.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.7e-68 265.0 750 40.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.1e-67 262.3 699 44.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.2e-67 259.2 628 43.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.6e-66 258.5 747 36.1
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 3.5e-66 257.3 746 43.3
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 4.6e-66 256.9 438 45.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 3.9e-65 253.8 733 40.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.1e-64 252.3 752 37.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 5.6e-64 250.0 711 38.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-63 248.8 713 37.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 2.8e-63 247.7 801 34.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-62 245.7 706 37.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-62 245.7 776 39.2
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-62 244.2 151 82.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.4e-61 240.7 443 54.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 6.4e-60 236.5 627 37.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.3e-60 236.1 745 34.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.9e-59 235.0 697 42.9
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 7.1e-59 233.0 608 35.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.5e-58 230.7 712 41.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 6.0e-58 229.9 700 34.7
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.0e-57 229.2 681 42.3
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 6.6e-57 226.5 692 42.3
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 8.6e-57 226.1 693 34.3
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.3e-56 224.2 754 40.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.5e-56 222.6 712 33.1
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.7e-55 220.3 755 41.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 4.7e-55 220.3 713 35.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.7e-55 220.3 326 47.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.2e-54 216.9 767 36.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-53 215.3 690 34.3
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.4e-53 214.2 250 52.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.4e-52 209.9 700 42.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.1e-51 209.1 703 40.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-51 208.8 690 40.9
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 3.2e-51 207.6 683 41.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.6e-50 205.3 681 40.2
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.6e-50 205.3 649 35.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.7e-50 204.5 623 36.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.0e-49 202.6 613 42.4
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.0e-49 201.1 776 36.9
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 4.3e-48 197.2 660 32.7
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.2e-47 195.7 686 32.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-47 195.3 724 38.7
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 5.8e-45 186.8 673 34.9
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-44 185.7 627 37.0
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.8e-44 184.1 630 36.8
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.4e-44 183.3 648 37.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.1e-43 182.6 444 43.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 5.4e-43 180.3 299 49.8
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.1e-42 178.3 693 32.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 3.5e-42 177.6 626 32.3
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.0e-41 174.5 680 31.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 2.1e-39 168.3 570 34.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.1e-39 166.4 625 34.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-37 161.4 401 37.2
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 6.4e-36 156.8 443 49.2
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.1e-35 156.0 706 30.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.2e-35 154.5 628 36.3
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 4.2e-35 154.1 612 32.0
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.1e-35 153.3 252 43.3
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 4.6e-34 150.6 653 32.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.3e-32 144.4 740 29.1
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.1e-31 139.8 724 33.1
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.0e-29 135.2 809 28.3
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.9e-27 128.6 359 48.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.4e-27 128.3 196 41.3
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 9.3e-27 126.3 125 60.0
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.3e-23 115.9 479 40.1
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 8.1e-23 113.2 505 35.6
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.6e-21 106.7 177 43.5
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 8.4e-20 103.2 530 32.5
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 8.4e-20 103.2 530 32.5
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 8.4e-20 103.2 145 50.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 9.3e-19 99.8 144 45.8
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 2.1e-18 98.6 520 32.7
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-17 96.3 630 28.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-17 95.5 94 64.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.9e-17 94.4 298 34.9
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.9e-16 92.0 586 30.7
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 2.8e-15 88.2 503 36.2
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.3e-14 84.0 313 37.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 5.3e-14 84.0 239 35.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 6.9e-14 83.6 153 47.1
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 1.9e-11 75.5 80 61.2
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 5.5e-11 73.9 117 43.6
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 5.5e-11 73.9 94 52.1
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 9.3e-11 73.2 99 54.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-10 72.8 238 29.4
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.0e-09 69.7 186 34.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.5e-08 65.9 115 42.6
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.6e-07 62.4 298 29.2
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-07 62.0 349 28.4


User provided reference genes

Program Settings