Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.8e-78 295.8 143 100.0
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.5e-66 254.6 148 84.5
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 9.4e-64 246.9 148 81.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 8.8e-62 240.4 159 75.5
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 4.4e-61 238.0 159 74.2
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.3e-60 236.5 164 72.6
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.6e-58 228.8 162 71.0
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.1e-56 223.4 175 66.9
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 4.2e-56 221.5 175 64.6
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 5.3e-51 204.5 168 65.5
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.5e-48 196.4 107 89.7
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.0e-46 190.3 158 59.5
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.3e-46 189.1 154 59.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 8.8e-46 187.2 162 56.8
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.0e-45 186.0 144 61.8
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 1.3e-44 183.3 158 57.0
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.7e-44 183.0 146 61.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.3e-44 181.0 158 57.6
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-43 179.9 177 52.5
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.8e-43 179.5 144 61.8
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.4e-43 179.1 143 61.5
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.1e-43 178.7 148 61.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 4.1e-43 178.3 142 60.6
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.0e-43 177.6 153 57.5
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 9.1e-43 177.2 155 56.8
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-42 176.8 168 54.2
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.6e-42 176.4 157 56.1
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.0e-42 176.0 143 62.2
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.0e-42 176.0 162 54.9
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 2.0e-42 176.0 138 60.9
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.7e-42 175.6 158 55.1
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 4.5e-42 174.9 154 56.5
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.9e-42 174.5 144 58.3
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 5.9e-42 174.5 164 56.1
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 5.9e-42 174.5 154 56.5
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.0e-41 173.7 154 57.1
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.0e-41 173.7 156 57.1
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.3e-41 173.3 143 58.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.3e-41 173.3 168 53.6
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.7e-41 172.9 154 57.1
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 3.8e-41 171.8 141 60.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 5.0e-41 171.4 107 77.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 5.0e-41 171.4 157 56.1
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-40 170.2 169 52.1
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.5e-40 169.9 153 55.6
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.9e-40 169.5 153 54.9
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.9e-40 169.5 149 57.0
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 2.5e-40 169.1 171 50.9
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.5e-40 169.1 193 47.7
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 3.3e-40 168.7 107 76.6
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.3e-40 168.7 170 51.8
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 4.2e-40 168.3 151 57.6
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 7.2e-40 167.5 157 54.1
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 9.5e-40 167.2 151 57.0
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.2e-39 166.8 144 56.2
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 1.2e-39 166.8 175 50.9
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.6e-39 166.4 178 49.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 8.0e-39 164.1 154 54.5
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.0e-39 164.1 148 55.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.4e-38 163.3 148 56.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.4e-38 163.3 178 50.0
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.4e-38 163.3 173 50.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.8e-38 162.9 139 59.0
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 1.8e-38 162.9 156 53.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.2e-38 161.4 153 52.9
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 5.2e-38 161.4 133 59.4
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.5e-37 159.8 146 56.2
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.5e-37 159.8 167 50.3
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 2.0e-37 159.5 148 55.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.0e-37 159.5 148 54.7
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.4e-37 158.7 146 55.5
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.4e-37 158.7 146 55.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 3.4e-37 158.7 146 55.5
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 4.4e-37 158.3 146 55.5
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.4e-37 158.3 151 51.7
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 4.4e-37 158.3 184 47.8
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 7.5e-37 157.5 146 54.8
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 7.5e-37 157.5 164 50.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.8e-36 155.6 168 50.0
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.7e-36 155.2 139 54.7
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.1e-35 153.7 172 47.1
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.1e-35 153.7 138 55.1
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 1.4e-35 153.3 157 51.0
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.4e-35 152.5 139 57.6
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 4.1e-35 151.8 207 41.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 7.0e-35 151.0 155 52.3
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 3.5e-34 148.7 137 53.3
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.9e-34 147.9 155 51.0
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.9e-33 145.6 103 67.0
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 5.0e-33 144.8 144 53.5
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.5e-32 143.3 103 64.1
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.5e-32 143.3 107 62.6
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 1.9e-32 142.9 103 65.0
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.9e-32 142.9 148 48.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.5e-32 142.5 126 56.3
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.3e-32 141.7 102 65.7
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 5.6e-32 141.4 102 65.7
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 7.3e-32 141.0 103 67.0
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 9.5e-32 140.6 102 65.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 1.6e-31 139.8 103 66.0
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.6e-31 139.8 102 64.7
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.6e-31 139.8 148 48.6
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 2.8e-31 139.0 102 64.7
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.6e-31 138.7 102 64.7
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 6.1e-31 137.9 102 65.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 8.0e-31 137.5 108 61.1
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 8.0e-31 137.5 144 47.9
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 8.0e-31 137.5 102 65.7
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.0e-30 137.1 104 63.5
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.0e-30 137.1 144 46.5
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.0e-30 137.1 110 62.7
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 1.8e-30 136.3 128 54.7
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.0e-30 135.6 102 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 8.9e-30 134.0 154 47.4
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.4e-29 131.7 103 60.2
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 7.5e-29 131.0 151 45.0
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 2.2e-28 129.4 126 54.8
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.2e-27 125.6 151 47.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.1e-27 125.2 94 63.8
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 5.4e-27 124.8 146 46.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.7e-26 122.5 167 40.1
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.0e-26 121.3 141 47.5
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 6.6e-25 117.9 144 43.8
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 8.6e-25 117.5 160 41.2
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.5e-24 115.9 142 48.6
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.8e-22 109.8 125 43.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 3.1e-22 109.0 106 50.0
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 2.6e-21 105.9 143 43.4
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 5.8e-21 104.8 154 42.2
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 5.8e-21 104.8 69 68.1
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 9.2e-19 97.4 98 55.1
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.6e-18 96.7 85 55.3
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.3e-17 93.6 106 47.2
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 3.9e-17 92.0 68 64.7
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.0e-17 91.7 151 37.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 8.6e-17 90.9 103 49.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.1e-16 90.5 67 64.2
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.3e-16 89.0 64 59.4
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 7.3e-16 87.8 69 60.9
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 6.8e-14 81.3 108 42.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 5.8e-13 78.2 62 62.9
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 7.5e-13 77.8 129 37.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.9e-13 77.4 79 49.4
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 5.4e-11 71.6 148 32.4
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.7e-09 66.6 47 61.7
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-08 63.9 110 40.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.5e-08 63.5 111 39.6
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 4.7e-07 58.5 75 42.7
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.1e-06 57.4 36 66.7
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.8e-06 56.6 35 71.4
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 6.8e-06 54.7 36 63.9
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 8.9e-06 54.3 53 47.2


User provided reference genes

Program Settings