Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.3e-252 875.9 440 100.0
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 9.8e-229 796.6 440 88.0
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 2.3e-225 785.4 440 87.5
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.3e-212 743.0 441 82.5
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.2e-212 742.3 441 82.5
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.9e-209 731.5 442 81.4
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.5e-208 729.6 448 80.1
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 2.9e-204 715.3 444 80.9
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 9.5e-200 700.3 462 75.3
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.2e-199 699.9 446 78.5
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.6e-199 699.5 441 78.7
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.1e-179 633.6 381 80.1
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.4e-179 632.5 450 69.3
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 2.7e-178 629.0 335 89.6
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 6.0e-178 627.9 380 76.8
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 7.9e-178 627.5 383 77.5
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.0e-177 627.1 400 74.2
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.0e-177 627.1 435 68.7
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 1.8e-177 626.3 400 74.0
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 2.3e-177 625.9 462 67.7
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 3.0e-177 625.5 388 75.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 8.7e-177 624.0 386 74.4
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 8.7e-177 624.0 383 76.5
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 8.7e-177 624.0 383 76.2
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.5e-176 623.2 384 76.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 3.3e-176 622.1 388 75.3
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 4.3e-176 621.7 405 72.8
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 4.3e-176 621.7 379 76.8
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 5.6e-176 621.3 386 73.8
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.3e-175 620.2 378 76.2
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 6.2e-175 617.8 458 68.1
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 6.2e-175 617.8 413 71.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.1e-174 617.1 383 76.0
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.4e-174 616.7 458 67.9
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 1.8e-174 616.3 383 74.9
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 1.2e-173 613.6 463 66.1
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 1.5e-173 613.2 457 67.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 3.4e-173 612.1 408 72.3
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 3.4e-173 612.1 404 72.5
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 9.9e-173 610.5 454 68.1
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 3.8e-172 608.6 388 74.2
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 4.9e-172 608.2 450 66.9
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 6.4e-172 607.8 384 75.5
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.2e-171 605.5 456 64.9
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.2e-171 605.1 403 71.7
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 4.2e-171 605.1 388 74.5
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 5.5e-171 604.7 390 73.8
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 9.3e-171 604.0 384 74.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.6e-170 603.2 456 66.7
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 2.1e-170 602.8 454 66.1
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 6.0e-170 601.3 386 73.1
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 3.0e-169 599.0 384 73.4
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 3.9e-169 598.6 450 65.3
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 5.1e-169 598.2 381 73.5
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 1.1e-168 597.0 384 72.9
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 4.3e-168 595.1 471 62.8
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 9.6e-168 594.0 384 72.7
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 2.1e-167 592.8 384 72.1
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 4.8e-167 591.7 433 67.2
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 6.2e-167 591.3 363 75.2
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.4e-165 585.5 388 72.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.5e-165 585.1 384 71.6
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 5.8e-165 584.7 411 68.9
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 1.0e-164 583.9 384 72.4
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 1.0e-164 583.9 385 72.5
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 1.9e-163 579.7 396 70.5
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 5.5e-163 578.2 380 72.9
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 6.0e-162 574.7 454 63.4
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.0e-161 573.9 384 69.5
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.0e-161 572.4 386 73.1
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.5e-160 569.3 410 68.8
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 5.7e-160 568.2 422 67.1
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 5.7e-160 568.2 395 68.6
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 9.7e-160 567.4 366 73.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 9.7e-160 567.4 445 65.2
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 2.2e-159 566.2 400 66.5
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 2.2e-159 566.2 385 69.6
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 3.7e-159 565.5 334 78.1
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 8.2e-159 564.3 409 68.9
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.0e-156 557.4 384 68.8
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 3.8e-156 555.4 384 68.0
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 4.2e-155 552.0 387 67.7
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 7.2e-155 551.2 451 61.6
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 5.7e-152 541.6 368 67.9
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.7e-151 538.9 404 65.3
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.8e-150 536.6 368 67.4
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 2.4e-150 536.2 366 66.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 3.2e-147 525.8 381 69.3
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 3.6e-146 522.3 368 67.7
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 1.8e-142 510.0 397 63.0
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 3.8e-140 502.3 384 65.6
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.5e-136 490.3 364 64.8
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 2.0e-136 490.0 355 66.5
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 1.7e-135 486.9 375 65.3
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.1e-134 484.2 318 69.8
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.5e-133 478.8 445 56.2
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.5e-131 473.8 380 62.1
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.7e-127 460.3 281 77.2
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 8.5e-124 448.0 381 60.4
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 5.5e-123 445.3 358 58.9
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.7e-120 435.3 335 63.9
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 7.5e-120 434.9 381 58.5
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.3e-116 423.3 209 97.6
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 4.7e-114 415.6 238 86.1
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 6.1e-114 415.2 383 55.9
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.3e-111 407.5 259 74.1
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.8e-110 403.7 388 54.9
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 8.3e-103 378.3 264 68.9
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 4.6e-93 345.9 213 75.1
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 4.3e-91 339.3 384 45.8
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 4.7e-90 335.9 282 61.0
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.2e-85 321.2 292 56.8
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.5e-85 319.7 361 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.4e-81 307.8 359 44.0
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.1e-77 293.9 172 82.0
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.1e-75 288.1 178 78.1
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 8.1e-74 282.0 185 70.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.5e-72 277.7 179 70.4
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.0e-72 277.3 279 47.3
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 6.4e-71 272.3 256 54.7
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-70 271.6 244 56.6
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 1.1e-62 245.0 176 65.3
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 9.3e-54 215.3 147 71.4
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 1.8e-52 211.1 292 41.8
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.2e-45 188.3 237 47.7
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.2e-40 171.8 130 65.4
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 5.7e-35 152.9 88 76.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.9e-30 137.9 223 40.8
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.2e-30 137.1 73 87.7
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 4.7e-29 133.3 140 52.9
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.5e-27 128.3 364 32.7
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 4.4e-27 126.7 123 56.1
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.0e-23 115.5 74 77.0
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.6e-21 108.2 125 44.8
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 6.3e-18 96.3 69 65.2
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 2.1e-13 81.3 71 56.3
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 1.4e-12 78.6 63 60.3
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 3.0e-12 77.4 167 31.1
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 5.4e-09 66.6 38 76.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 7.7e-08 62.8 39 69.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 2.2e-07 61.2 29 96.6
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 3.8e-07 60.5 46 58.7
CAN.G140.11 Capsicum annuum HOM05D001621 ORTHO05D013110 9.4e-06 55.8 44 63.6


User provided reference genes

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