Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.8e-202 709.1 386 100.0
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 3.5e-182 641.7 358 95.0
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 9.6e-172 607.1 362 89.8
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 2.6e-169 599.0 358 88.3
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.4e-167 593.2 390 81.8
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-166 590.1 393 82.4
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 3.9e-165 585.1 393 81.9
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 8.7e-165 583.9 393 81.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.6e-163 579.7 393 80.4
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.8e-163 578.9 388 80.2
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.1e-162 575.5 390 78.7
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 5.3e-162 574.7 366 84.7
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.7e-158 562.4 379 80.2
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 6.1e-158 561.2 366 82.8
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 7.9e-158 560.8 377 81.4
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.0e-157 560.5 376 81.4
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.8e-157 559.7 377 80.9
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.3e-157 559.3 334 86.5
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 3.0e-157 558.9 372 81.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 3.9e-157 558.5 379 79.7
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.1e-156 557.0 394 77.7
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.5e-156 556.6 368 79.9
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.6e-156 555.8 374 81.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 3.3e-156 555.4 379 79.9
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 3.3e-156 555.4 370 80.3
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 4.4e-156 555.1 365 81.4
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 5.7e-156 554.7 376 81.4
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 5.7e-156 554.7 372 81.2
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 9.7e-156 553.9 366 81.1
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.7e-155 553.1 394 77.7
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 2.2e-155 552.7 404 76.2
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.2e-155 552.7 374 80.2
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 2.8e-155 552.4 367 80.7
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 2.8e-155 552.4 388 77.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 3.7e-155 552.0 371 80.6
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 4.8e-155 551.6 405 77.3
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.8e-155 551.6 383 78.6
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 6.3e-155 551.2 366 81.7
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 6.3e-155 551.2 334 86.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 8.2e-155 550.8 370 80.5
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-154 550.4 366 80.1
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.1e-154 550.4 415 74.2
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.1e-154 550.4 388 76.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-154 549.7 396 76.0
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 3.1e-154 548.9 371 80.6
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 4.1e-154 548.5 372 80.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 5.3e-154 548.1 373 78.6
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 6.9e-154 547.7 385 77.1
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 9.1e-154 547.4 388 78.1
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 9.1e-154 547.4 362 80.7
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 9.1e-154 547.4 362 80.7
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 9.1e-154 547.4 362 81.5
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 1.2e-153 547.0 336 85.1
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.5e-153 546.6 367 79.8
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 3.4e-153 545.4 372 79.6
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.4e-153 545.4 362 80.9
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 4.5e-153 545.0 333 85.6
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 5.9e-153 544.7 362 81.2
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.0e-152 543.9 335 84.8
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-152 543.5 389 76.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.7e-152 543.1 362 79.8
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 2.2e-152 542.7 371 79.0
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.9e-152 542.3 401 74.6
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.9e-152 542.3 365 78.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-151 540.4 391 75.2
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.1e-151 540.4 364 78.6
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.1e-151 540.4 343 82.2
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.9e-151 539.7 372 78.0
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 2.5e-151 539.3 387 76.2
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 3.2e-151 538.9 403 74.4
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.2e-151 538.9 394 75.9
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.2e-151 538.9 394 75.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.2e-151 537.7 331 84.6
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 7.2e-151 537.7 331 84.6
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 9.4e-151 537.3 336 83.0
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-150 537.0 394 75.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-150 537.0 394 75.6
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.2e-150 537.0 381 76.9
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.2e-150 537.0 409 73.1
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.6e-150 536.6 396 74.7
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.6e-150 536.6 402 73.1
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.7e-150 535.8 338 83.1
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 3.6e-150 535.4 373 77.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 6.1e-150 534.6 389 76.6
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.0e-149 533.9 333 83.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.4e-149 533.5 335 83.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 3.0e-149 532.3 373 77.5
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 5.2e-149 531.6 377 75.3
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.5e-148 530.0 367 77.7
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.0e-148 529.6 367 77.7
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 3.3e-148 528.9 335 82.1
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 3.3e-148 528.9 373 77.7
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 9.7e-148 527.3 333 82.3
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 2.8e-147 525.8 327 83.8
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.7e-147 525.4 381 75.6
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.8e-147 525.0 333 81.7
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.8e-146 523.1 334 81.4
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.0e-146 521.2 339 81.7
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.2e-145 520.4 307 87.0
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 5.9e-145 518.1 334 80.5
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 6.5e-144 514.6 374 74.1
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 6.5e-144 514.6 370 76.5
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 2.5e-143 512.7 393 73.0
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 3.2e-143 512.3 364 75.0
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.5e-143 511.5 345 80.3
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 9.4e-143 510.8 366 75.4
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 6.7e-141 504.6 381 72.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-140 503.1 364 76.9
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 2.0e-140 503.1 297 86.5
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 7.5e-140 501.1 297 86.5
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.3e-139 500.4 330 78.2
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.1e-138 497.3 408 68.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 7.0e-138 494.6 367 75.5
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 7.7e-137 491.1 370 72.2
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 1.3e-136 490.3 297 85.2
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.1e-135 487.3 375 69.9
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 2.5e-135 486.1 334 77.5
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.2e-131 473.0 312 79.5
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 8.3e-131 471.1 320 80.3
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 5.4e-130 468.4 324 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 5.9e-129 464.9 336 71.1
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.0e-125 454.1 349 69.1
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 6.8e-125 451.4 417 60.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 2.9e-120 436.0 337 72.1
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 4.7e-118 428.7 272 84.6
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.6e-113 412.1 246 88.2
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.7e-112 410.2 313 68.7
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 2.1e-110 403.3 334 69.2
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 4.6e-105 385.6 285 68.8
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 9.5e-103 377.9 345 63.8
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.6e-102 377.1 334 59.6
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.9e-98 363.6 330 59.4
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.1e-86 323.6 198 85.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 4.3e-79 299.3 198 81.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 4.3e-79 299.3 198 81.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 3.2e-74 283.1 166 86.1
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.1e-64 249.2 361 48.2
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 5.1e-64 249.2 294 46.3
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 8.4e-59 231.9 293 44.7
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.8e-56 224.2 324 42.9
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 2.2e-54 217.2 129 84.5
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.0e-51 208.4 155 72.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.4e-48 198.0 206 59.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 7.4e-47 192.2 178 61.8
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.7e-38 163.3 149 61.1
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-34 151.4 213 46.9
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 5.9e-28 129.4 80 82.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 3.8e-27 126.7 93 73.1
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 6.5e-27 125.9 124 59.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.8e-16 91.3 75 65.3
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 6.3e-14 82.8 95 55.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.5e-12 77.0 90 50.0
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 7.7e-12 75.9 48 81.2
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 5.5e-10 69.7 83 54.2
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.6e-09 68.2 42 71.4
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 2.0e-07 61.2 43 72.1


User provided reference genes

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