Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 4.8e-151 537.7 260 100.0
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 1.2e-109 400.2 256 75.4
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 8.1e-98 360.9 246 69.1
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 8.4e-95 350.9 254 65.7
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 6.0e-93 344.7 254 65.4
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 2.4e-89 332.8 257 61.5
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 3.8e-87 325.5 256 63.7
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 1.4e-86 323.6 256 63.3
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 1.2e-85 320.5 255 60.0
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 2.1e-85 319.7 254 59.1
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 2.3e-84 316.2 254 59.4
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 6.7e-68 261.5 270 49.6
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 1.1e-67 260.8 266 48.5
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 7.4e-67 258.1 266 48.9
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 9.1e-65 251.1 241 55.2
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 5.0e-63 245.4 265 48.7
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 8.5e-63 244.6 257 49.0
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.6e-61 240.4 270 46.3
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 2.7e-61 239.6 262 47.3
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 6.1e-61 238.4 177 62.1
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 7.9e-61 238.0 259 47.1
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 1.4e-60 237.3 175 61.7
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.4e-60 237.3 265 46.4
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 2.3e-60 236.5 265 46.8
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 2.3e-60 236.5 270 45.9
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 2.3e-60 236.5 179 60.3
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 2.3e-60 236.5 265 46.4
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 2.3e-60 236.5 192 58.3
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 3.9e-60 235.7 260 48.5
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 3.9e-60 235.7 267 46.8
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 5.1e-60 235.3 265 46.4
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 8.8e-60 234.6 176 59.7
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 8.8e-60 234.6 265 46.0
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.5e-59 233.8 259 46.7
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.0e-59 233.4 236 48.3
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 3.3e-59 232.6 177 60.5
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 3.3e-59 232.6 176 60.2
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 4.4e-59 232.3 177 59.9
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 5.7e-59 231.9 193 56.0
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 9.7e-59 231.1 177 59.3
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 9.7e-59 231.1 265 46.4
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 1.7e-58 230.3 193 56.0
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 2.2e-58 229.9 268 44.0
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 3.7e-58 229.2 177 57.1
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 3.7e-58 229.2 264 45.5
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 4.8e-58 228.8 192 54.7
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 6.3e-58 228.4 176 58.5
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 6.3e-58 228.4 261 46.0
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 8.2e-58 228.0 257 45.9
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 1.1e-57 227.6 267 46.1
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 1.8e-57 226.9 177 57.6
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 1.8e-57 226.9 238 48.7
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 4.1e-57 225.7 178 57.9
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 5.3e-57 225.3 253 46.2
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 5.3e-57 225.3 190 53.7
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 6.9e-57 224.9 176 56.8
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 6.9e-57 224.9 176 58.0
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 6.9e-57 224.9 176 55.1
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 9.1e-57 224.6 176 58.0
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 1.5e-56 223.8 254 44.1
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 1.5e-56 223.8 176 58.0
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 2.0e-56 223.4 190 53.2
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 2.0e-56 223.4 190 53.2
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 2.6e-56 223.0 176 55.7
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 3.4e-56 222.6 210 51.9
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 4.5e-56 222.2 257 45.5
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 4.5e-56 222.2 176 56.2
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 5.9e-56 221.9 177 57.1
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.0e-55 221.1 175 56.6
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.3e-55 220.7 267 44.9
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 1.7e-55 220.3 232 47.4
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 2.2e-55 219.9 174 56.9
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 2.2e-55 219.9 175 54.3
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 2.9e-55 219.5 267 44.6
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 3.8e-55 219.2 183 55.7
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 6.5e-55 218.4 176 55.7
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 8.5e-55 218.0 176 55.7
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 1.1e-54 217.6 176 55.7
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 1.1e-54 217.6 173 54.3
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 2.5e-54 216.5 203 51.2
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 5.5e-54 215.3 174 54.0
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 1.2e-53 214.2 176 55.7
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-53 214.2 176 54.0
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 3.6e-53 212.6 173 54.9
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 4.7e-53 212.2 180 51.7
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 3.9e-52 209.1 176 52.3
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 6.7e-52 208.4 206 48.5
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 1.5e-51 207.2 176 54.5
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 2.6e-51 206.5 176 51.1
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 7.4e-51 204.9 176 51.7
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 7.4e-51 204.9 204 49.5
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 7.4e-51 204.9 178 53.4
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 9.7e-51 204.5 163 55.8
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 9.7e-51 204.5 159 57.2
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.7e-51 204.5 204 49.5
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.2e-50 203.4 196 47.4
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 1.8e-49 200.3 186 48.4
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.4e-49 199.9 178 53.4
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 2.6e-48 196.4 182 49.5
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 7.7e-48 194.9 249 42.6
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 3.8e-47 192.6 162 55.6
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 5.5e-46 188.7 257 44.0
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 5.5e-46 188.7 163 50.9
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 2.1e-45 186.8 227 41.4
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 2.1e-45 186.8 178 48.9
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 4.8e-42 175.6 187 47.6
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 6.3e-42 175.3 204 38.7
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.5e-40 169.5 135 50.4
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.2e-39 166.8 162 46.3
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 2.2e-39 166.8 162 46.3
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.1e-38 164.5 181 43.1
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 9.4e-38 161.4 187 44.9
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 8.0e-37 158.3 155 49.7
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 1.0e-36 157.9 102 65.7
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 7.5e-35 151.8 151 49.7
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 1.7e-34 150.6 162 51.2
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 2.2e-34 150.2 102 61.8
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 6.3e-34 148.7 152 42.1
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 5.4e-33 145.6 100 60.0
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 4.2e-30 136.0 101 53.5
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 6.8e-28 128.6 105 59.0
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 2.7e-24 116.7 166 44.6
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.9e-23 113.2 72 58.3
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 4.3e-22 109.4 149 42.3
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 1.2e-16 91.3 146 39.7
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 5.6e-14 82.4 158 34.8
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 7.3e-14 82.0 78 50.0
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 4.7e-13 79.3 110 36.4
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 1.5e-11 74.3 117 29.9
PGR042G3213 Punica granatum HOM05D005144 ORTHO05D006112 7.5e-11 72.0 117 29.9
MD06G1109700 Malus domestica HOM05D005144 ORTHO05D006112 1.3e-10 71.2 125 28.0
arahy.Tifrunner.gnm1.ann1.11VL1S Arachis hypogaea HOM05D005144 ORTHO05D006112 2.2e-10 70.5 125 28.0
arahy.Tifrunner.gnm1.ann1.72DNA3 Arachis hypogaea HOM05D005144 ORTHO05D006112 2.2e-10 70.5 125 28.0
CBR_g48131 Chara braunii HOM05D005144 ORTHO05D006112 2.2e-10 70.5 118 29.7
FAN18G1164 Fragaria x ananassa HOM05D005144 ORTHO05D006112 2.2e-10 70.5 128 29.7
Manes.01G052400 Manihot esculenta HOM05D005144 ORTHO05D006112 2.9e-10 70.1 117 29.9
FvH4_5g04920 Fragaria vesca HOM05D005144 ORTHO05D006112 3.7e-10 69.7 128 29.7
FAN13G1564 Fragaria x ananassa HOM05D005144 ORTHO05D006112 3.7e-10 69.7 128 29.7
Manes.02G008400 Manihot esculenta HOM05D005144 ORTHO05D006112 3.7e-10 69.7 117 29.1
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 4.9e-10 69.3 125 40.0
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 8.3e-10 68.6 133 28.6
FAN18G2696 Fragaria x ananassa HOM05D005144 ORTHO05D006112 8.3e-10 68.6 128 29.7
FAN04G3040 Fragaria x ananassa HOM05D005144 ORTHO05D006112 1.1e-09 68.2 128 28.9
MBI07_g40676_MAGBIO Magnolia biondii HOM05D005144 ORTHO05D006112 1.4e-09 67.8 117 29.9
MD14G1130800 Malus domestica HOM05D005144 ORTHO05D006112 1.9e-09 67.4 119 29.4
RcHm_v2.0_Chr7g0194161 Rosa chinensis HOM05D005144 ORTHO05D006112 1.9e-09 67.4 128 28.1
BraA03t12780Z Brassica rapa HOM05D005668 ORTHO05D007082 2.4e-09 67.0 40 72.5
Cpa.g.sc634.1 Carica papaya HOM05D005144 ORTHO05D006112 2.4e-09 67.0 120 27.5
TAR375G0238 Trochodendron aralioides HOM05D005144 ORTHO05D006112 7.0e-09 65.5 117 28.2
HanXRQChr17g0534951 Helianthus annuus HOM05D005144 ORTHO05D006112 1.6e-08 64.3 117 29.1
Prupe.5G122700 Prunus persica HOM05D005144 ORTHO05D006112 1.6e-08 64.3 125 24.8
TAR374G1437 Trochodendron aralioides HOM05D005144 ORTHO05D006112 2.1e-08 63.9 117 27.4
Lsat_1_v5_gn_3_11240 Lactuca sativa HOM05D005144 ORTHO05D006112 6.6e-07 58.9 122 28.7


User provided reference genes

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