Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 0.0e+00 1255.0 654 100.0
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 0.0e+00 1158.7 653 92.3
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 0.0e+00 1156.4 654 92.7
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.8e-288 995.0 647 80.7
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 9.9e-286 986.5 643 80.6
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-285 986.1 643 80.6
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.7e-285 985.7 656 78.4
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 1.2e-283 979.5 647 79.8
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 9.6e-281 969.9 645 78.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 3.1e-279 964.9 647 78.2
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.8e-277 958.0 650 77.4
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-276 956.1 656 77.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-276 955.7 656 77.1
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 7.1e-276 953.7 656 77.1
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.6e-275 952.6 647 77.7
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 5.8e-270 934.1 647 76.2
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.3e-266 922.9 677 72.4
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.5e-262 907.9 587 80.1
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.8e-253 878.2 679 68.5
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.5e-249 866.3 647 68.8
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 2.0e-246 855.9 652 68.7
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 2.6e-246 855.5 647 69.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.9e-245 852.0 667 66.1
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 8.5e-245 850.5 635 70.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 7.9e-243 844.0 660 67.9
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.3e-242 842.4 668 66.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.3e-242 842.4 653 68.3
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 1.1e-241 840.1 631 68.8
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.2e-240 835.9 644 68.0
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.2e-240 835.9 660 67.0
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 7.7e-238 827.4 700 63.4
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.5e-237 823.9 644 67.1
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.5e-236 822.4 655 67.2
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.2e-236 821.6 644 66.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 7.2e-236 820.8 648 67.1
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 1.6e-235 819.7 641 67.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-235 819.3 631 67.8
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.7e-235 818.9 663 64.6
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 4.7e-235 818.1 620 67.7
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.4e-234 816.6 651 66.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 6.7e-234 814.3 653 64.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 6.7e-234 814.3 700 62.3
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.6e-233 812.4 650 66.9
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.3e-233 812.0 655 65.3
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 3.3e-233 812.0 650 66.8
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-232 809.7 654 66.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.8e-231 806.2 653 63.9
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-231 805.8 631 67.4
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.7e-229 799.7 667 64.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 3.2e-228 795.4 664 61.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.2e-227 793.5 651 63.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.5e-222 775.4 653 62.5
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.7e-221 773.1 619 65.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.5e-220 770.0 668 62.6
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.2e-220 768.5 655 62.9
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 5.5e-220 768.1 643 62.5
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 5.5e-220 768.1 669 59.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 9.5e-220 767.3 651 62.2
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 1.2e-219 766.9 644 62.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.0e-218 763.8 663 61.1
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 2.3e-218 762.7 639 61.7
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.0e-217 759.6 643 61.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.7e-216 756.5 654 60.6
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.8e-216 755.7 639 61.0
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.8e-216 755.7 639 61.0
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.7e-216 755.4 656 60.2
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 3.7e-216 755.4 642 60.7
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.7e-216 755.4 671 60.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.1e-215 752.3 559 71.4
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.1e-215 752.3 660 60.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 9.2e-215 750.7 662 61.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.0e-214 749.6 642 60.3
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.0e-213 747.3 653 58.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.0e-213 747.3 626 61.7
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.0e-213 747.3 639 60.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.7e-213 746.5 671 58.4
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.1e-212 743.8 650 58.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.6e-212 741.5 626 61.2
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 7.3e-212 741.1 643 59.3
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 9.5e-212 740.7 644 60.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.6e-211 740.0 664 59.2
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 2.8e-211 739.2 658 59.9
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.0e-211 737.6 646 59.1
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 3.4e-209 732.3 658 59.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 5.7e-209 731.5 655 58.6
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 6.4e-208 728.0 660 58.5
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 3.9e-205 718.8 651 59.1
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.1e-204 717.2 668 56.7
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.0e-202 710.7 542 67.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 1.5e-201 706.8 673 56.6
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.1e-199 700.7 709 53.3
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.2e-198 697.2 603 62.7
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 7.8e-198 694.5 671 55.3
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 3.3e-196 689.1 656 56.1
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.3e-196 689.1 536 64.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 4.3e-196 688.7 653 56.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-194 684.1 654 57.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.0e-194 682.2 647 55.5
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.7e-189 666.8 651 55.3
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.7e-179 632.1 581 58.0
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.8e-177 625.2 537 59.6
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.3e-173 614.0 531 59.7
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 8.7e-173 611.3 634 52.5
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.9e-170 601.7 550 58.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.7e-168 597.0 652 52.3
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.9e-168 596.3 653 50.8
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.8e-168 595.9 512 60.7
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.4e-167 592.0 647 49.6
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.0e-165 586.3 623 50.9
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 8.7e-157 558.1 404 73.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 1.0e-149 534.6 647 45.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 8.7e-149 531.6 402 66.9
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 2.5e-143 513.5 635 45.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 3.6e-142 509.6 623 46.5
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.8e-139 500.0 437 60.2
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 6.1e-134 482.3 636 41.8
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.0e-132 477.2 641 42.7
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.7e-131 473.0 641 42.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 9.1e-130 468.4 636 42.6
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.3e-120 438.0 396 61.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 5.0e-104 382.9 430 53.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.7e-89 334.0 608 37.8
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.5e-87 327.4 245 66.1
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.5e-87 325.5 259 66.0
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 9.8e-84 315.5 367 48.8
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.3e-67 261.9 428 39.7
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-66 258.5 380 44.2
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-62 245.4 252 56.3
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.2e-62 243.0 209 60.3
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.1e-61 242.3 604 32.8
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 2.3e-56 224.6 203 63.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 1.3e-51 208.8 202 57.9
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.0e-48 199.1 306 42.8
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-46 192.2 292 41.4
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.6e-44 184.5 133 69.9
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.0e-40 172.6 187 55.1
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.4e-37 162.2 258 39.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.6e-36 157.9 167 46.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.9e-35 154.5 236 44.5
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.1e-31 142.5 608 25.7
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 6.3e-30 136.7 96 71.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 5.9e-28 130.2 108 61.1
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.7e-27 128.6 93 63.4
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-24 117.9 134 53.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.8e-24 116.3 132 51.5
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.3e-23 114.0 132 53.0
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 5.7e-23 113.6 164 45.7
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 4.8e-22 110.5 78 71.8
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 8.2e-22 109.8 86 65.1
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 9.1e-21 106.3 119 52.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.5e-18 97.1 69 72.5
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.6e-17 95.5 67 74.6
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 3.6e-17 94.4 65 70.8
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.1e-15 89.4 75 56.0
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.7e-14 84.3 83 59.0
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-13 82.8 65 63.1
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 9.1e-13 79.7 67 62.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 1.7e-11 75.5 82 51.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 3.8e-11 74.3 68 51.5
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.2e-09 69.3 161 28.6
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 6.1e-09 67.0 101 47.5
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 2.0e-07 62.0 79 49.4
arahy.Tifrunner.gnm1.ann1.JG00WY Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-07 60.5 48 60.4
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 9.7e-07 59.7 59 45.8
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 9.7e-07 59.7 67 50.7
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 9.7e-07 59.7 67 50.7
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 1.3e-06 59.3 41 65.9
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 2.2e-06 58.5 52 55.8


User provided reference genes

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