Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 4.6e-126 454.5 222 100.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 9.3e-119 430.3 222 93.7
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.9e-117 424.9 226 92.0
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 8.1e-115 417.2 223 92.4
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 4.5e-105 384.8 224 84.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.0e-104 383.6 224 83.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 9.7e-100 367.1 225 81.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.6e-99 366.3 225 82.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.4e-98 363.2 224 81.2
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.9e-95 352.8 215 80.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.5e-92 343.2 228 74.1
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.3e-92 342.0 229 74.7
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 9.7e-92 340.5 229 75.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.3e-91 340.1 229 71.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.1e-90 337.0 231 71.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 4.1e-90 335.1 230 72.6
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 5.3e-90 334.7 229 73.8
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 9.1e-90 334.0 229 71.2
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.0e-89 332.8 225 75.6
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.9e-89 331.3 225 72.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.0e-88 330.5 229 72.9
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.7e-88 329.7 229 72.5
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-88 328.9 228 71.1
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 5.0e-88 328.2 224 71.9
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 5.0e-88 328.2 224 73.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.5e-88 327.4 224 73.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.1e-87 327.0 223 73.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.9e-87 326.2 224 73.2
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.5e-87 325.9 224 73.2
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 5.5e-87 324.7 224 73.7
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 7.2e-87 324.3 229 69.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.4e-87 323.9 224 72.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 9.4e-87 323.9 229 71.6
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.1e-86 322.8 227 71.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 4.7e-86 321.6 229 70.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.1e-85 318.2 226 70.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.1e-85 318.2 229 69.9
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.1e-84 317.0 226 69.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.0e-84 316.2 230 66.5
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.6e-84 315.8 231 67.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 5.7e-84 314.7 230 66.5
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.7e-84 314.7 230 66.5
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 2.8e-83 312.4 230 68.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 8.2e-83 310.8 229 69.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.8e-82 309.7 232 67.2
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 4.1e-82 308.5 229 69.4
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 5.3e-82 308.1 239 66.9
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 4.5e-81 305.1 224 69.2
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.9e-81 304.7 223 68.2
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.9e-81 304.7 224 67.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 7.7e-81 304.3 224 66.1
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 7.7e-81 304.3 230 67.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.0e-80 301.6 223 68.6
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.0e-80 301.6 224 65.6
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.5e-80 301.2 222 66.2
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.5e-79 300.1 229 66.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 8.0e-78 294.3 220 67.3
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.6e-76 289.3 223 69.5
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.6e-76 289.3 223 69.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.3e-76 288.9 225 66.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.7e-76 288.1 223 64.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 9.7e-76 287.3 237 64.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 3.7e-75 285.4 224 65.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.1e-74 282.3 225 68.4
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.1e-74 282.0 227 63.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.3e-74 281.6 227 63.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.0e-74 281.2 227 63.9
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.1e-74 280.8 224 62.5
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.1e-74 280.8 228 64.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 3.5e-73 278.9 222 61.7
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.5e-73 278.5 235 62.1
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.5e-73 278.5 225 63.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.5e-73 278.5 232 62.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.0e-72 277.3 230 63.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-72 276.6 227 63.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 8.5e-72 274.2 222 64.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-71 273.9 227 60.8
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-71 273.1 222 60.4
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.9e-71 273.1 222 62.6
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.5e-71 272.7 222 62.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 5.5e-71 271.6 232 62.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.4e-71 270.8 217 62.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-70 270.0 224 61.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.1e-70 269.6 227 63.9
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 3.6e-70 268.9 224 63.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.7e-70 268.5 229 62.0
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 6.1e-70 268.1 224 62.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.3e-69 266.2 227 60.4
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.0e-69 265.8 219 61.6
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 6.8e-69 264.6 222 63.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.8e-69 264.2 217 61.8
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-68 263.8 226 60.6
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.0e-68 263.1 227 59.5
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.4e-68 262.3 217 61.8
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 9.8e-68 260.8 230 61.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 9.8e-68 260.8 220 60.9
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-67 260.4 220 60.9
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.3e-67 260.4 168 73.8
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.2e-67 259.6 224 58.5
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.4e-66 256.9 217 60.8
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 4.1e-66 255.4 219 58.9
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.0e-66 254.6 230 59.6
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.6e-65 253.4 220 59.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.0e-65 253.1 218 58.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.9e-65 251.5 226 56.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 5.9e-65 251.5 218 61.0
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 7.7e-65 251.1 226 56.6
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 7.7e-65 251.1 226 56.2
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 7.7e-65 251.1 226 56.6
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-64 250.4 221 56.6
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.7e-64 250.0 231 56.3
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.5e-64 248.1 246 54.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.1e-63 247.3 225 58.7
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.5e-63 246.1 225 57.3
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 7.2e-63 244.6 219 56.6
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.1e-62 243.0 146 76.7
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-62 242.3 226 56.2
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 3.6e-62 242.3 224 57.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 6.1e-62 241.5 240 52.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 6.1e-62 241.5 256 53.9
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.4e-61 240.4 185 65.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.3e-61 239.6 224 56.7
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 6.8e-61 238.0 212 57.1
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 8.8e-61 237.7 236 54.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.2e-60 237.3 214 55.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.5e-60 236.9 224 57.6
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.5e-60 234.6 224 61.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.8e-59 232.6 222 55.4
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.8e-59 232.6 227 53.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.8e-59 232.6 222 56.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 4.9e-59 231.9 201 58.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 4.9e-59 231.9 192 62.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.3e-59 231.5 226 54.9
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-58 229.9 247 51.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.8e-58 229.9 236 52.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.6e-57 226.9 150 70.7
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 8.6e-56 221.1 224 58.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.9e-55 219.9 221 49.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 7.3e-55 218.0 221 49.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.6e-54 216.9 214 52.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.8e-54 216.1 144 68.8
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.1e-54 214.9 198 53.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.4e-53 213.8 227 48.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.0e-53 212.6 221 48.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 3.0e-53 212.6 171 59.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.0e-53 212.6 221 48.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-53 212.6 200 52.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 6.8e-53 211.5 139 70.5
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.2e-52 210.7 242 51.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-51 207.2 223 47.5
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-51 206.8 221 48.4
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 8.3e-51 204.5 144 65.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 8.3e-51 204.5 217 48.8
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.1e-50 204.1 208 51.9
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 4.1e-50 202.2 273 45.4
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.2e-49 200.7 237 48.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-48 197.6 222 46.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.1e-46 189.9 227 48.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 3.6e-46 189.1 138 59.4
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 8.9e-45 184.5 225 46.2
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 9.8e-44 181.0 220 45.9
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.3e-43 180.6 202 49.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.4e-42 177.2 162 58.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 5.4e-42 175.3 122 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 3.5e-41 172.6 231 45.9
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.0e-41 171.8 167 52.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 3.0e-40 169.5 135 61.5
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 4.7e-38 162.2 129 58.1
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.4e-37 160.6 215 47.0
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.2e-36 157.5 106 65.1
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 9.8e-36 154.5 82 87.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 6.4e-35 151.8 229 44.1
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 6.4e-35 151.8 229 44.1
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.5e-31 139.8 225 40.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.3e-31 139.4 88 75.0
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.3e-24 117.5 112 57.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.1e-22 110.2 84 63.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 4.2e-18 95.9 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.6e-16 88.6 52 75.0
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 1.1e-07 61.2 134 36.6


User provided reference genes

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