Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.2e-200 703.0 358 100.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 1.6e-192 676.0 358 96.4
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 8.1e-181 637.1 360 91.4
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 3.5e-176 621.7 360 89.7
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 6.4e-170 600.9 364 86.0
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.1e-169 600.1 368 84.2
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.4e-169 599.7 368 85.6
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.4e-169 599.0 368 84.8
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-163 579.7 366 83.1
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 4.5e-163 578.2 367 82.0
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 7.6e-163 577.4 367 82.0
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 5.1e-159 564.7 358 82.1
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 5.6e-158 561.2 368 79.1
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 6.2e-149 531.2 341 80.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.2e-146 522.7 359 76.9
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 2.5e-145 519.2 369 76.2
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 2.1e-144 516.2 355 75.2
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.3e-143 513.5 357 76.2
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 2.3e-143 512.7 359 75.5
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.3e-143 512.7 362 74.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 3.0e-143 512.3 346 76.9
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 1.9e-142 509.6 370 73.2
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 3.3e-142 508.8 370 72.7
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.7e-142 508.1 359 76.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.4e-142 507.7 363 73.3
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 9.7e-142 507.3 366 73.0
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 9.7e-142 507.3 358 75.1
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 9.7e-142 507.3 360 74.4
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.3e-141 506.9 363 74.4
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.3e-141 506.9 363 74.4
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.3e-141 506.9 363 74.4
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.7e-141 505.4 353 75.4
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 4.8e-141 505.0 357 74.2
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 4.8e-141 505.0 366 73.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 6.3e-141 504.6 342 76.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 6.3e-141 504.6 329 78.4
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 8.2e-141 504.2 338 76.9
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 8.2e-141 504.2 354 75.4
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 8.2e-141 504.2 363 73.6
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 6.9e-140 501.1 366 73.0
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 9.0e-140 500.7 362 72.1
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.5e-139 500.0 335 77.3
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 1.0e-138 497.3 359 71.3
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 1.3e-138 496.9 357 73.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.7e-138 496.5 317 80.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 5.0e-138 495.0 360 72.8
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 5.0e-138 495.0 326 77.3
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 6.5e-138 494.6 357 72.8
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 8.5e-138 494.2 368 72.8
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.5e-137 492.7 367 72.2
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.5e-137 491.5 380 70.8
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 1.2e-136 490.3 365 72.3
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 3.6e-136 488.8 357 72.3
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 4.6e-136 488.4 321 77.9
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 4.6e-136 488.4 356 71.3
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.9e-135 485.3 388 69.6
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 8.7e-135 484.2 364 70.9
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 8.7e-135 484.2 345 72.5
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.7e-135 484.2 388 68.8
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.7e-135 484.2 336 73.2
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 6.3e-133 478.0 361 70.1
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 8.2e-133 477.6 327 74.6
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 3.1e-132 475.7 333 74.5
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 5.3e-132 474.9 357 69.7
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 6.9e-132 474.6 349 70.2
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.5e-131 473.4 358 70.4
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.0e-131 473.0 311 74.3
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 3.4e-131 472.2 311 74.3
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.9e-131 471.5 314 74.5
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 5.9e-131 471.5 330 74.2
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 7.7e-131 471.1 349 71.6
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.7e-130 469.9 354 70.9
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 2.2e-130 469.5 359 69.4
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 2.2e-130 469.5 343 70.6
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 2.9e-130 469.2 378 68.0
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 5.0e-130 468.4 351 70.7
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.5e-130 468.0 330 75.2
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 5.5e-129 464.9 341 71.0
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 9.4e-129 464.2 357 69.7
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.6e-128 463.4 345 69.3
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.6e-128 462.2 358 66.5
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 7.9e-128 461.1 341 69.2
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 7.9e-128 461.1 372 66.9
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.0e-127 460.7 356 68.0
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.4e-127 460.3 287 81.5
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 2.3e-127 459.5 362 67.1
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.0e-127 459.1 346 70.5
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 8.8e-127 457.6 361 66.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 8.8e-127 457.6 357 68.6
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 5.7e-126 454.9 361 68.1
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.7e-125 453.4 361 68.1
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 8.2e-125 451.1 330 70.9
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.1e-124 450.7 328 72.6
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 6.9e-124 448.0 360 67.5
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.5e-123 445.3 340 69.4
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 5.9e-123 444.9 359 66.9
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 7.7e-123 444.5 356 66.0
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 1.7e-122 443.4 359 66.0
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.4e-121 440.3 317 72.2
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.4e-121 440.3 348 66.4
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 2.5e-121 439.5 356 65.4
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 2.5e-121 439.5 356 65.4
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 7.2e-121 438.0 359 63.8
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 9.4e-121 437.6 352 65.9
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 2.7e-120 436.0 348 65.2
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 2.7e-120 436.0 348 65.2
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 4.7e-120 435.3 348 65.5
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 6.1e-120 434.9 339 66.1
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 6.1e-120 434.9 357 63.9
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.4e-119 433.7 341 65.4
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 3.9e-119 432.2 341 70.7
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 5.2e-119 431.8 361 63.4
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.1e-118 430.6 365 63.3
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 4.4e-118 428.7 347 65.1
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.7e-118 428.3 356 62.6
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.7e-118 428.3 330 67.9
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 1.3e-117 427.2 341 66.0
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.4e-116 423.7 351 63.0
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.8e-116 423.3 326 68.7
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-116 422.9 331 66.2
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.2e-115 420.6 353 62.0
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-115 420.6 353 62.0
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.6e-115 420.2 357 60.5
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 2.6e-115 419.5 359 59.9
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.6e-115 419.5 373 62.7
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 3.5e-115 419.1 351 62.4
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.3e-114 417.2 315 65.1
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.5e-114 414.5 328 66.2
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.5e-113 411.8 361 60.4
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 7.0e-108 394.8 356 58.7
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-107 394.0 276 73.6
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.6e-104 382.5 267 70.0
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 8.8e-103 377.9 330 60.0
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.2e-101 373.2 347 57.9
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 7.2e-97 358.2 325 62.5
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 1.8e-95 353.6 283 68.6
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 8.3e-93 344.7 281 67.3
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 7.0e-92 341.7 262 66.0
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 7.0e-92 341.7 330 54.2
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.2e-86 324.3 366 50.0
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.3e-85 320.9 225 75.6
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 1.8e-84 317.0 334 54.2
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.8e-84 317.0 225 72.9
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 6.6e-82 308.5 271 57.2
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 7.3e-81 305.1 223 72.2
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 8.0e-80 301.6 215 71.6
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.1e-79 301.2 202 75.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 4.0e-79 299.3 340 50.3
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 4.9e-77 292.4 204 73.5
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 2.4e-76 290.0 218 67.9
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 3.1e-71 273.1 252 58.7
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 4.4e-62 242.7 279 46.2
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 2.8e-56 223.4 135 83.0
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 7.1e-52 208.8 135 80.0
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.1e-48 197.2 159 66.0
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 6.2e-48 195.7 131 74.8
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 4.8e-40 169.5 158 55.7
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 7.6e-38 162.2 102 77.5
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 1.8e-31 141.0 108 66.7
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 4.1e-23 113.2 92 56.5
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.3e-21 108.2 271 26.9
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 2.5e-17 94.0 349 26.1


User provided reference genes

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