Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 1.5e-220 769.2 405 100.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.4e-207 724.5 411 93.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 6.3e-206 720.7 411 92.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 9.1e-205 716.8 411 93.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.6e-191 672.2 415 86.0
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 9.7e-191 670.2 413 86.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 7.7e-188 660.6 409 86.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.3e-187 659.8 429 83.4
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 5.5e-186 654.4 411 83.5
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 5.4e-181 637.9 415 81.4
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.5e-180 635.2 411 83.9
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.0e-179 633.6 415 81.0
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.1e-178 630.2 415 80.2
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 5.5e-178 627.9 412 81.1
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.2e-178 627.5 414 80.0
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 9.5e-178 627.1 414 80.0
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.2e-177 626.7 413 80.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.6e-177 626.3 415 80.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.1e-177 625.9 416 79.1
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.8e-177 625.5 414 79.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.8e-177 625.5 414 79.5
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 6.1e-177 624.4 415 79.5
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 8.0e-177 624.0 415 78.6
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 8.0e-177 624.0 414 79.7
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.4e-176 623.2 416 78.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.3e-176 622.5 416 79.1
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 3.0e-176 622.1 410 80.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 6.8e-176 620.9 418 78.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 6.8e-176 620.9 416 78.6
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 8.8e-176 620.5 422 78.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 8.8e-176 620.5 419 78.3
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.2e-175 620.2 414 78.7
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 1.2e-175 620.2 416 79.3
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 9.8e-175 617.1 414 78.5
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.8e-174 615.5 411 79.8
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.7e-174 615.1 417 79.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.4e-173 613.2 415 78.3
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 9.2e-173 610.5 409 78.0
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.7e-172 609.0 415 77.6
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.5e-172 608.2 415 78.6
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 4.5e-172 608.2 412 78.2
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 5.9e-172 607.8 416 76.9
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.9e-172 607.8 415 77.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.9e-171 605.5 414 78.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 2.9e-171 605.5 409 77.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.8e-171 605.1 417 77.0
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 5.0e-171 604.7 414 77.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 5.0e-171 604.7 422 76.3
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.6e-171 604.4 411 78.8
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.1e-170 603.6 416 76.7
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.5e-170 602.4 415 78.3
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 2.5e-170 602.4 411 77.6
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 2.5e-170 602.4 414 76.8
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.5e-170 602.4 411 77.4
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 3.3e-170 602.1 411 77.1
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.3e-170 601.7 409 77.3
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.6e-170 601.3 415 76.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 7.3e-170 600.9 413 76.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 7.3e-170 600.9 405 77.0
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 7.3e-170 600.9 414 76.6
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 2.1e-169 599.4 427 75.9
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.8e-169 599.0 426 76.5
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 4.7e-169 598.2 433 75.3
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 6.1e-169 597.8 414 75.8
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.4e-168 596.7 426 76.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 2.3e-168 595.9 411 77.1
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 5.2e-168 594.7 413 76.3
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 5.2e-168 594.7 414 74.4
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 5.2e-168 594.7 411 77.4
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.6e-167 592.4 407 76.7
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 9.8e-167 590.5 411 76.2
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.2e-166 589.3 446 73.1
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.2e-166 589.3 405 75.3
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 3.7e-166 588.6 415 77.8
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 446 72.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.1e-165 587.0 452 71.7
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-165 586.3 407 76.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.4e-165 585.9 416 76.4
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 2.4e-165 585.9 413 74.3
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 5.4e-165 584.7 412 75.7
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 7.0e-165 584.3 412 75.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-164 582.8 413 75.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.0e-164 582.8 422 75.6
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.0e-163 580.5 421 74.6
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.0e-163 578.9 415 74.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 5.0e-163 578.2 417 74.3
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 6.6e-163 577.8 429 72.0
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 3.3e-162 575.5 421 73.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.8e-161 572.4 412 73.1
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-161 572.0 416 75.0
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 6.2e-161 571.2 412 73.3
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.2e-161 571.2 411 72.5
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 5.2e-160 568.2 420 74.5
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.2e-160 568.2 355 83.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 8.9e-160 567.4 363 82.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 2.0e-159 566.2 420 71.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 4.9e-158 561.6 415 73.0
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 7.0e-157 557.8 413 72.9
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.8e-153 545.8 348 81.9
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.6e-153 545.4 348 80.2
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.6e-153 545.4 348 80.2
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 6.8e-152 541.2 420 69.0
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 8.9e-152 540.8 392 72.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.1e-149 531.2 416 71.2
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-143 513.1 480 63.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.0e-143 513.1 480 63.1
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.4e-143 511.9 320 81.2
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 4.1e-141 505.4 353 75.6
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.3e-139 500.4 419 68.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.4e-136 489.6 417 62.1
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 7.1e-133 478.0 358 71.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 8.7e-131 471.1 415 63.4
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.2e-125 452.6 426 56.1
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.4e-120 437.2 420 61.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 6.7e-115 418.3 276 80.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 5.6e-114 415.2 334 62.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 8.7e-107 391.3 406 57.1
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.5e-103 379.0 329 64.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 1.3e-102 377.5 324 66.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 8.2e-97 358.2 364 59.6
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 9.4e-85 318.2 317 54.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.1e-82 311.2 419 44.6
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-77 294.3 241 65.6
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.6e-76 289.7 420 41.2
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.4e-67 261.2 465 38.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 5.2e-67 259.2 469 36.2
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.8e-59 234.2 330 42.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.3e-57 225.3 121 87.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 7.0e-56 222.2 134 82.8
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.8e-55 218.8 320 42.5
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.0e-46 190.3 340 36.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 2.8e-44 183.7 344 34.3
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.2e-44 182.6 109 78.9
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-43 181.4 110 77.3
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 6.4e-41 172.6 134 69.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.6e-39 166.4 109 77.1
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 5.8e-34 149.4 98 77.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.1e-29 135.2 156 53.8
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.7e-25 121.3 141 51.1
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 2.4e-24 117.5 65 89.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.2e-24 117.1 123 59.3
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-22 110.9 58 82.8
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.0e-19 100.1 71 73.2
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.4e-18 96.7 112 52.7
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 9.3e-16 89.0 65 69.2
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 2.1e-15 87.8 58 81.0
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.1e-12 77.8 101 41.6
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 1.2e-10 72.0 97 49.5
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 7.6e-10 69.3 50 66.0
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.8e-09 67.0 62 58.1
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 4.9e-09 66.6 56 66.1
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 8.4e-09 65.9 47 68.1
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-08 64.3 41 75.6
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.2e-08 63.9 56 60.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-07 62.0 43 72.1
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 2.7e-07 60.8 36 75.0
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 2.7e-07 60.8 36 75.0
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 2.7e-07 60.8 36 75.0
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 2.7e-07 60.8 60 60.0
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 1.0e-06 58.9 64 54.7
arahy.Tifrunner.gnm1.ann1.MF977T Arachis hypogaea HOM05D000158 ORTHO05D000197 1.8e-06 58.2 75 50.7
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 3.0e-06 57.4 120 28.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 3.9e-06 57.0 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 3.9e-06 57.0 120 28.3
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 5.1e-06 56.6 36 75.0
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-06 56.6 120 28.3
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 5.1e-06 56.6 120 28.3
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-06 56.6 120 28.3
AL3G46510 Arabidopsis lyrata HOM05D000076 ORTHO05D002344 6.7e-06 56.2 43 67.4
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 6.7e-06 56.2 34 79.4


User provided reference genes

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