Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 6.2e-52 207.2 107 100.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 5.8e-34 147.5 107 72.9
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 7.6e-26 120.6 80 75.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 5.1e-22 107.8 75 72.0
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-21 106.3 107 56.1
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-21 106.3 107 56.1
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-21 106.3 107 56.1
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 6.2e-20 100.9 60 76.7
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.4e-19 99.8 80 65.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.3e-19 97.8 60 75.0
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 1.5e-18 96.3 66 71.2
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 2.6e-18 95.5 78 64.1
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 4.5e-18 94.7 75 65.3
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 5.8e-18 94.4 61 68.9
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 9.9e-18 93.6 60 73.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.3e-17 93.2 60 71.7
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 2.9e-17 92.0 78 61.5
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.9e-17 92.0 61 70.5
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.9e-17 91.3 61 67.2
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 4.9e-17 91.3 60 70.0
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.4e-17 90.9 60 68.3
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.4e-16 89.7 60 70.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.9e-16 89.4 60 68.3
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 2.4e-16 89.0 60 66.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.2e-16 88.6 60 68.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.2e-16 88.6 60 68.3
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.2e-16 88.6 61 63.9
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 3.2e-16 88.6 60 66.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 3.2e-16 88.6 63 66.7
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 4.2e-16 88.2 60 66.7
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 9.3e-16 87.0 60 63.3
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.2e-15 86.7 60 65.0
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.7e-15 85.5 60 65.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 3.5e-15 85.1 60 66.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.5e-15 85.1 60 66.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.5e-15 85.1 60 66.7
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 3.5e-15 85.1 60 66.7
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 4.6e-15 84.7 60 65.0
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 7.9e-15 84.0 60 65.0
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 7.9e-15 84.0 72 56.9
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-14 83.6 60 65.0
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-14 83.6 60 65.0
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-14 83.6 60 65.0
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-14 83.6 60 65.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.0e-14 83.6 57 68.4
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.3e-14 83.2 61 62.3
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.8e-14 82.8 60 65.0
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.8e-14 82.8 60 65.0
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 2.3e-14 82.4 58 63.8
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 3.0e-14 82.0 60 63.3
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 3.0e-14 82.0 60 63.3
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.0e-14 82.0 60 65.0
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 5.1e-14 81.3 60 63.3
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 5.1e-14 81.3 60 65.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.5e-13 79.7 61 57.4
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.5e-13 79.7 60 65.0
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 2.5e-13 79.0 60 63.3
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 2.5e-13 79.0 60 63.3
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 4.3e-13 78.2 54 66.7
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 7.4e-13 77.4 57 64.9
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 9.6e-13 77.0 49 67.3
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 1.6e-12 76.3 63 60.3
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 3.1e-11 72.0 61 59.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 4.0e-11 71.6 60 55.0
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 4.0e-11 71.6 60 55.0
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.2e-10 70.1 53 58.5
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.4e-10 68.6 60 53.3
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 4.5e-10 68.2 46 67.4
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 5.8e-10 67.8 53 52.8
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 1.7e-09 66.2 61 50.8
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.9e-09 65.5 48 56.2
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.8e-09 65.1 53 50.9
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 3.8e-09 65.1 43 67.4
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 4.9e-09 64.7 60 50.0
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 4.2e-08 61.6 53 50.9
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 4.2e-08 61.6 60 48.3
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 5.5e-08 61.2 53 52.8
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 5.5e-08 61.2 56 48.2
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 7.1e-08 60.8 47 55.3
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 7.1e-08 60.8 53 49.1
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 9.3e-08 60.5 53 50.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 9.3e-08 60.5 58 51.7
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 1.6e-07 59.7 57 49.1
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.7e-07 58.9 60 46.7
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.5e-07 58.5 57 49.1
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.5e-07 58.5 57 47.4
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 4.6e-07 58.2 59 49.2
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 4.6e-07 58.2 56 50.0
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 7.9e-07 57.4 56 44.6
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 3.0e-06 55.5 60 43.3
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.0e-06 55.5 57 47.4
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 3.9e-06 55.1 53 45.3
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 8.7e-06 53.9 53 47.2


User provided reference genes

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