Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 1.2e-92 343.2 180 100.0
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 9.0e-72 273.9 181 82.9
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 1.8e-67 259.6 181 79.6
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 2.0e-55 219.5 182 69.8
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 9.1e-48 194.1 184 63.6
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 8.5e-46 187.6 190 61.6
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 2.0e-42 176.4 186 61.8
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 3.3e-42 175.6 176 59.7
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 5.7e-42 174.9 199 54.8
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 9.7e-42 174.1 189 56.6
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 1.7e-41 173.3 190 56.3
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 2.8e-41 172.6 190 57.9
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 8.2e-41 171.0 234 53.4
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 2.0e-39 166.4 190 56.3
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 1.0e-38 164.1 180 57.8
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 1.3e-38 163.7 193 53.4
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.7e-38 163.3 211 47.9
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 1.7e-38 163.3 187 57.8
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 2.2e-38 162.9 186 60.2
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 2.9e-38 162.5 197 53.3
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 3.8e-38 162.2 200 53.5
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 5.0e-38 161.8 203 53.7
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 6.5e-38 161.4 197 55.3
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.1e-37 160.6 186 59.1
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 1.1e-37 160.6 198 52.0
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 1.1e-37 160.6 204 52.9
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.5e-37 160.2 198 52.5
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 2.5e-37 159.5 205 53.2
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 5.5e-37 158.3 191 56.0
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 5.5e-37 158.3 193 57.5
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 2.1e-36 156.4 199 50.3
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 2.1e-36 156.4 187 56.7
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 4.7e-36 155.2 197 49.7
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 1.0e-35 154.1 201 50.2
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 2.3e-35 152.9 212 50.5
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 6.8e-35 151.4 204 50.5
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 8.8e-35 151.0 214 46.7
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 2.0e-34 149.8 193 53.4
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 4.4e-34 148.7 179 55.3
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 7.5e-34 147.9 168 52.4
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 9.8e-34 147.5 210 49.0
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 2.2e-33 146.4 201 48.8
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 3.7e-33 145.6 196 52.0
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 1.1e-32 144.1 215 46.5
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 4.1e-32 142.1 200 49.0
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 4.1e-32 142.1 219 43.8
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.1e-32 142.1 211 45.0
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 4.1e-32 142.1 211 45.0
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.4e-32 141.7 219 44.3
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.2e-31 140.6 219 43.8
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 1.6e-31 140.2 194 47.9
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 2.0e-31 139.8 200 51.0
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 4.5e-31 138.7 188 47.3
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 3.8e-30 135.6 223 45.3
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 8.6e-30 134.4 209 47.4
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.5e-29 133.7 208 46.2
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 1.9e-29 133.3 202 48.0
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.2e-29 132.5 209 43.5
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.6e-28 130.2 212 42.9
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 2.8e-28 129.4 175 44.6
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 3.6e-28 129.0 206 41.7
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 3.6e-28 129.0 178 48.9
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 1.4e-27 127.1 193 46.1
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 1.2e-26 124.0 166 47.6
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.5e-26 123.6 196 44.4
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.0e-26 123.2 196 46.9
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.3e-25 120.6 217 40.6
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 3.7e-25 119.0 182 46.2
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 8.3e-25 117.9 198 41.4
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 1.2e-23 114.0 196 42.9
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 2.7e-23 112.8 170 43.5
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 3.5e-23 112.5 196 42.3
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 5.9e-23 111.7 211 43.1
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 1.3e-22 110.5 178 41.0
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 3.8e-22 109.0 195 42.1
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 1.5e-21 107.1 198 42.4
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 1.9e-21 106.7 173 43.9
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 4.3e-21 105.5 169 40.8
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 2.8e-20 102.8 170 41.8
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 2.8e-20 102.8 158 43.7
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 3.6e-20 102.4 143 46.9
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 8.0e-20 101.3 218 37.2
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.0e-19 100.9 179 43.0
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 5.2e-19 98.6 179 38.5
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 2.6e-18 96.3 236 37.7
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 3.7e-17 92.4 139 48.2
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 4.1e-16 89.0 184 37.5
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 1.2e-15 87.4 98 53.1
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 4.6e-15 85.5 157 39.5
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 1.3e-14 84.0 199 35.7
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 4.3e-13 79.0 90 50.0
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 7.3e-13 78.2 133 35.3
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.1e-11 74.3 133 44.4
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.2e-10 70.9 167 35.9
Glyma.02G293000 Glycine max HOM05D007542 ORTHO05D009519 7.5e-10 68.2 168 39.3


User provided reference genes

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