Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G043200 Phaseolus vulgaris HOM05D000089 ORTHO05D005030 1.1e-59 233.0 116 100.0
Phvul.004G012500 Phaseolus vulgaris HOM05D000089 ORTHO05D005030 1.2e-48 196.4 124 83.1
VMungo0464G2128 Vigna mungo HOM05D000089 ORTHO05D005030 1.9e-46 189.1 124 79.0
Glyma.19G006900 Glycine max HOM05D000089 ORTHO05D005030 5.9e-40 167.5 125 70.4
Glyma.19G007200 Glycine max HOM05D000089 ORTHO05D005030 5.9e-40 167.5 125 70.4
Medtr6g406250 Medicago truncatula HOM05D000089 ORTHO05D005030 8.5e-39 163.7 124 67.7
TPR.G35383 Trifolium pratense HOM05D000089 ORTHO05D005030 5.5e-38 161.0 124 66.9
Glyma.05G006600 Glycine max HOM05D000089 ORTHO05D005030 7.2e-38 160.6 125 67.2
Lalb_Chr06g0175971 Lupinus albus HOM05D000089 ORTHO05D005030 1.4e-36 156.4 124 62.9
Lj2g0020545 Lotus japonicus HOM05D000089 ORTHO05D005030 6.7e-36 154.1 124 63.7
arahy.Tifrunner.gnm1.ann1.RRB9FM Arachis hypogaea HOM05D000089 ORTHO05D005030 2.0e-35 152.5 121 66.9
arahy.Tifrunner.gnm1.ann1.NZB2J0 Arachis hypogaea HOM05D000089 ORTHO05D005030 1.7e-34 149.4 124 64.5
Ca_04186_v3 Cicer arietinum L. HOM05D000089 ORTHO05D005030 8.2e-34 147.1 124 62.9
Manes.15G165400 Manihot esculenta HOM05D000089 ORTHO05D005030 7.2e-30 134.0 124 57.3
COL.COLO4_28992 Corchorus olitorius HOM05D000089 ORTHO05D005030 8.0e-29 130.6 124 55.6
Duzib264G0889 Durio zibethinus HOM05D000089 ORTHO05D005030 2.3e-28 129.0 124 54.0
Gohir.D04G055400 Gossypium hirsutum HOM05D000089 ORTHO05D005030 2.3e-28 129.0 124 54.0
Gorai.012G062200 Gossypium raimondii HOM05D000089 ORTHO05D005030 2.3e-28 129.0 124 54.0
Gohir.A05G358700 Gossypium hirsutum HOM05D000089 ORTHO05D005030 1.1e-27 126.7 124 53.2
MD09G1031700 Malus domestica HOM05D000089 ORTHO05D005030 2.0e-27 125.9 124 55.6
GSVIVG01032458001 Vitis vinifera HOM05D000089 ORTHO05D005030 2.0e-27 125.9 124 53.2
CiPaw.03G039300 Carya illinoinensis HOM05D000089 ORTHO05D005030 3.3e-27 125.2 125 56.0
Thecc.04G011200 Theobroma cacao HOM05D000089 ORTHO05D005030 5.7e-27 124.4 124 51.6
RcHm_v2.0_Chr2g0172231 Rosa chinensis HOM05D000089 ORTHO05D005030 7.4e-27 124.0 127 54.3
Cfa007417 Carpinus fangiana HOM05D000089 ORTHO05D005030 9.7e-27 123.6 124 52.4
Duzib147G0579 Durio zibethinus HOM05D000089 ORTHO05D005030 1.7e-26 122.9 124 52.4
Eucgr.I01783 Eucalyptus grandis HOM05D000089 ORTHO05D005030 2.2e-26 122.5 129 52.7
PGR142G4241 Punica granatum HOM05D000089 ORTHO05D005030 2.2e-26 122.5 128 53.9
MD17G1033400 Malus domestica HOM05D000089 ORTHO05D005030 4.8e-26 121.3 125 52.0
Manes.17G115900 Manihot esculenta HOM05D000089 ORTHO05D005030 4.8e-26 121.3 124 54.0
Oeu062927.1 Olea europaea HOM05D000089 ORTHO05D005030 4.8e-26 121.3 126 50.0
Haze_14685 Corylus avellana HOM05D000089 ORTHO05D005030 1.1e-25 120.2 124 51.6
Prupe.3G286200 Prunus persica HOM05D000089 ORTHO05D005030 1.1e-25 120.2 124 52.4
Actinidia35748 Actinidia chinensis HOM05D000089 ORTHO05D005030 1.8e-25 119.4 124 51.6
CSS0020720 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D005030 2.4e-25 119.0 124 51.6
FAN14G4239 Fragaria x ananassa HOM05D000089 ORTHO05D005030 3.1e-25 118.6 127 51.2
Ciclev10015683m.g Citrus clementina HOM05D000089 ORTHO05D005030 4.1e-25 118.2 124 52.4
FAN05G1485 Fragaria x ananassa HOM05D000089 ORTHO05D005030 7.0e-25 117.5 127 50.4
Oeu043046.1 Olea europaea HOM05D000089 ORTHO05D005030 1.2e-24 116.7 126 47.6
FvH4_6g50850 Fragaria vesca HOM05D000089 ORTHO05D005030 1.6e-24 116.3 127 50.4
Sabra16G0229000 Salix brachista HOM05D000089 ORTHO05D005030 3.5e-24 115.2 125 52.8
TAR374G0957 Trochodendron aralioides HOM05D000089 ORTHO05D005030 5.9e-24 114.4 120 50.0
Atru.chr6.2315 Acer truncatum HOM05D000089 ORTHO05D005030 1.7e-23 112.8 158 41.1
Cfa007416 Carpinus fangiana HOM05D000089 ORTHO05D005030 1.7e-23 112.8 124 49.2
CiPaw.04G025700 Carya illinoinensis HOM05D000089 ORTHO05D005030 1.7e-23 112.8 111 55.0
FAN09G1817 Fragaria x ananassa HOM05D000089 ORTHO05D005030 1.7e-23 112.8 127 50.4
Lju41A36T59 Lonicera japonica HOM05D000089 ORTHO05D005030 2.2e-23 112.5 124 49.2
TWI12G0349 Tripterygium wilfordii HOM05D000089 ORTHO05D005030 2.9e-23 112.1 124 46.8
Haze_14686 Corylus avellana HOM05D000089 ORTHO05D005030 3.8e-23 111.7 124 48.4
Dinv35077 Davidia involucrata HOM05D000089 ORTHO05D005030 3.8e-23 111.7 124 48.4
QL02p076006 Quercus lobata HOM05D000089 ORTHO05D005030 5.0e-23 111.3 124 50.8
Potri.001G349600 Populus trichocarpa HOM05D000089 ORTHO05D005030 6.5e-23 110.9 125 51.2
THA.LOC104821079 Tarenaya hassleriana HOM05D000089 ORTHO05D005030 3.2e-22 108.6 114 50.9
vmacro18256 Vaccinium macrocarpon HOM05D000089 ORTHO05D005030 3.2e-22 108.6 126 50.0
MSTRG.24023 Avicennia marina HOM05D000089 ORTHO05D005030 5.5e-22 107.8 124 48.4
SalBow1G1571 Salvia bowleyana HOM05D000089 ORTHO05D005030 7.2e-22 107.5 124 49.2
DCAR_021691 Daucus carota HOM05D000089 ORTHO05D005030 9.4e-22 107.1 104 53.8
Gohir.D09G026500 Gossypium hirsutum HOM05D000089 ORTHO05D005030 9.4e-22 107.1 114 50.9
Gorai.006G030500 Gossypium raimondii HOM05D000089 ORTHO05D005030 9.4e-22 107.1 114 50.9
BcaB08g36955 Brassica carinata HOM05D000089 ORTHO05D005030 2.1e-21 105.9 118 49.2
BcaC04g19018 Brassica carinata HOM05D000089 ORTHO05D005030 2.1e-21 105.9 118 49.2
C09p62440 Brassica napus HOM05D000089 ORTHO05D005030 2.1e-21 105.9 118 49.2
BolC9t59082H Brassica oleracea HOM05D000089 ORTHO05D005030 2.1e-21 105.9 118 49.2
Gohir.A09G026800 Gossypium hirsutum HOM05D000089 ORTHO05D005030 2.1e-21 105.9 114 50.9
Sp6g29340 Schrenkiella parvula HOM05D000089 ORTHO05D005030 2.1e-21 105.9 112 51.8
BraA10t44461Z Brassica rapa HOM05D000089 ORTHO05D005030 2.7e-21 105.5 112 51.8
CANSAT64G1226 Cannabis sativa HOM05D000089 ORTHO05D005030 4.7e-21 104.8 126 46.8
AL6G25470 Arabidopsis lyrata HOM05D000089 ORTHO05D005030 6.1e-21 104.4 112 51.8
A10p23970 Brassica napus HOM05D000089 ORTHO05D005030 6.1e-21 104.4 112 50.9
CARHR198610 Cardamine hirsuta HOM05D000089 ORTHO05D005030 8.0e-21 104.0 118 48.3
AT5G14700 Arabidopsis thaliana HOM05D000089 ORTHO05D005030 1.4e-20 103.2 129 47.3
Thhalv10013866m.g Eutrema salsugineum HOM05D000089 ORTHO05D005030 1.4e-20 103.2 117 49.6
Carub.0006s1287 Capsella rubella HOM05D000089 ORTHO05D005030 1.8e-20 102.8 120 47.5
Sed0000494 Sechium edule HOM05D000089 ORTHO05D005030 4.0e-20 101.7 129 45.7
Aqoxy3G01042 Aquilegia oxysepala HOM05D000089 ORTHO05D005030 6.8e-20 100.9 120 43.3
ClCG10G014160 Citrullus lanatus HOM05D000089 ORTHO05D005030 6.8e-20 100.9 127 48.0
Sed0022000 Sechium edule HOM05D000089 ORTHO05D005030 6.8e-20 100.9 105 52.4
Aa31LG11G14760 Aethionema arabicum HOM05D000089 ORTHO05D005030 8.8e-20 100.5 112 50.0
Rhsim08G0053700 Rhododendron simsii HOM05D000089 ORTHO05D005030 1.2e-19 100.1 126 46.8
FAN02G0995 Fragaria x ananassa HOM05D000089 ORTHO05D005030 4.4e-19 98.2 114 48.2
A02p02670 Brassica napus HOM05D000089 ORTHO05D005030 5.7e-19 97.8 114 47.4
BraA02t05236Z Brassica rapa HOM05D000089 ORTHO05D005030 5.7e-19 97.8 114 47.4
BcaNung03103 Brassica carinata HOM05D000089 ORTHO05D005030 7.5e-19 97.4 114 47.4
PSO478G1365 Papaver somniferum HOM05D000089 ORTHO05D005030 7.5e-19 97.4 123 45.5
MSTRG.3165 Avicennia marina HOM05D000089 ORTHO05D005030 9.7e-19 97.1 124 43.5
SGA_v2.0_scaffold135G34884 Striga asiatica HOM05D000089 ORTHO05D005030 9.7e-19 97.1 126 43.7
Cc07_g02110 Coffea canephora HOM05D000089 ORTHO05D005030 1.3e-18 96.7 124 43.5
Nitab4.5_0006281g0010 Nicotiana tabacum HOM05D000089 ORTHO05D005030 1.3e-18 96.7 103 48.5
SGA_v2.0_scaffold205G41684 Striga asiatica HOM05D000089 ORTHO05D005030 1.3e-18 96.7 119 46.2
BcaC03g13454 Brassica carinata HOM05D000089 ORTHO05D005030 2.2e-18 95.9 111 48.6
C02p07230 Brassica napus HOM05D000089 ORTHO05D005030 2.2e-18 95.9 111 48.6
BolC2t06655H Brassica oleracea HOM05D000089 ORTHO05D005030 2.2e-18 95.9 111 48.6
Migut.H00107 Erythranthe guttata HOM05D000089 ORTHO05D005030 4.8e-18 94.7 129 41.9
ClCG09G019020 Citrullus lanatus HOM05D000089 ORTHO05D005030 8.3e-18 94.0 106 50.9
THA.LOC104825332 Tarenaya hassleriana HOM05D000089 ORTHO05D005030 8.3e-18 94.0 112 44.6
HanXRQChr15g0475041 Helianthus annuus HOM05D000089 ORTHO05D005030 1.4e-17 93.2 124 43.5
PGSC0003DMG400000521 Solanum tuberosum HOM05D000089 ORTHO05D005030 1.4e-17 93.2 104 47.1
ECA246G2377 Erigeron canadensis HOM05D000089 ORTHO05D005030 3.1e-17 92.0 124 44.4
Thhalv10005604m.g Eutrema salsugineum HOM05D000089 ORTHO05D005030 3.1e-17 92.0 112 45.5
HanXRQChr17g0548221 Helianthus annuus HOM05D000089 ORTHO05D005030 3.1e-17 92.0 124 42.7
CsaV3_3G042490 Cucumis sativus L. HOM05D000089 ORTHO05D005030 5.3e-17 91.3 133 45.9
PSO017G4391 Papaver somniferum HOM05D000089 ORTHO05D005030 7.0e-17 90.9 111 45.0
MELO3C021550.2 Cucumis melo HOM05D000089 ORTHO05D005030 1.2e-16 90.1 110 49.1
CAN.G206.21 Capsicum annuum HOM05D000089 ORTHO05D005030 1.6e-16 89.7 126 42.9
MELO3C009963.2 Cucumis melo HOM05D000089 ORTHO05D005030 2.7e-16 89.0 130 44.6
Lsat_1_v5_gn_0_38960 Lactuca sativa HOM05D000089 ORTHO05D005030 5.9e-16 87.8 104 43.3
Sc03g0007990 Simmondsia chinensis HOM05D000089 ORTHO05D005030 5.9e-16 87.8 104 41.3
Solyc02g086770.3 Solanum lycopersicum HOM05D000089 ORTHO05D005030 5.9e-16 87.8 104 45.2
Sopen02g031540 Solanum pennellii HOM05D000089 ORTHO05D005030 5.9e-16 87.8 104 45.2
Carub.0005s0640 Capsella rubella HOM05D000089 ORTHO05D005030 7.7e-16 87.4 112 42.0
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 1.0e-15 87.0 106 49.1
Sp2g16910 Schrenkiella parvula HOM05D000089 ORTHO05D005030 1.3e-15 86.7 128 39.1
MBI16_g27098_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D005030 6.5e-15 84.3 120 40.0
Os01g0639200 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D005030 6.5e-15 84.3 118 40.7
Zm00001eb158860 Zea mays HOM05D000089 ORTHO05D005030 8.5e-15 84.0 121 41.3
Zm00001eb359110 Zea mays HOM05D000089 ORTHO05D005030 9.4e-14 80.5 103 44.7
Zm00001eb344520 Zea mays HOM05D000089 ORTHO05D005030 2.7e-13 79.0 101 42.6
Os05g0578500 Oryza sativa ssp. japonica HOM05D000089 ORTHO05D005030 8.0e-13 77.4 104 43.3
Nitab4.5_0000372g0020 Nicotiana tabacum HOM05D000089 ORTHO05D005030 1.0e-12 77.0 91 45.1
Lsat_1_v5_gn_0_38980 Lactuca sativa HOM05D000089 ORTHO05D005030 1.5e-11 73.2 104 38.5
HPP92_008040 Vanilla planifolia HOM05D000089 ORTHO05D005030 2.6e-11 72.4 102 42.2
Potri.004G105000 Populus trichocarpa HOM05D000089 ORTHO05D005030 5.7e-11 71.2 130 34.6
CDE05G2282 Ceratophyllum demersum HOM05D000089 ORTHO05D005030 1.3e-10 70.1 123 35.0
SEGI_37169 Sequoiadendron giganteum HOM05D000089 ORTHO05D005030 1.7e-10 69.7 101 40.6
Manes.02G065400 Manihot esculenta HOM05D000089 ORTHO05D005030 2.8e-10 68.9 105 40.0
Atru.chr6.2222 Acer truncatum HOM05D000089 ORTHO05D005030 8.3e-10 67.4 56 55.4
Sabra17G0092400 Salix brachista HOM05D000089 ORTHO05D005030 1.4e-09 66.6 100 38.0
ATR0730G190 Amborella trichopoda HOM05D000089 ORTHO05D005030 1.8e-09 66.2 86 43.0
ATR0730G229 Amborella trichopoda HOM05D000089 ORTHO05D005030 4.1e-09 65.1 111 33.3
TAR371G0652 Trochodendron aralioides HOM05D000089 ORTHO05D005030 4.1e-09 65.1 104 37.5
TAR371G0851 Trochodendron aralioides HOM05D000089 ORTHO05D005030 7.0e-09 64.3 104 35.6
Potri.017G110500 Populus trichocarpa HOM05D000089 ORTHO05D005030 1.6e-08 63.2 100 36.0
CSS0003991 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D005030 2.7e-08 62.4 104 37.5
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 3.5e-08 62.0 44 65.9
Cpa.g.sc179.44 Carica papaya HOM05D000089 ORTHO05D005030 4.5e-08 61.6 105 38.1
Peaxi162Scf00129g01233 Petunia axillaris HOM05D000089 ORTHO05D005030 4.5e-08 61.6 91 40.7
Peaxi162Scf01056g00247 Petunia axillaris HOM05D000089 ORTHO05D005030 7.7e-08 60.8 112 36.6
Gohir.A07G073200 Gossypium hirsutum HOM05D000089 ORTHO05D005030 1.0e-07 60.5 91 37.4
Gohir.D07G077800 Gossypium hirsutum HOM05D000089 ORTHO05D005030 1.0e-07 60.5 91 37.4
Nn3g17650 Nelumbo nucifera HOM05D000089 ORTHO05D005030 1.7e-07 59.7 103 34.0
CiPaw.03G006100 Carya illinoinensis HOM05D000089 ORTHO05D005030 2.3e-07 59.3 97 34.0
MBI10_g18316_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D005030 2.3e-07 59.3 102 36.3
Thecc.04G144000 Theobroma cacao HOM05D000089 ORTHO05D005030 2.3e-07 59.3 106 35.8
GSVIVG01036464001 Vitis vinifera HOM05D000089 ORTHO05D005030 2.3e-07 59.3 127 31.5
Nitab4.5_0004420g0010 Nicotiana tabacum HOM05D000089 ORTHO05D005030 2.9e-07 58.9 99 37.4
CARHR149370 Cardamine hirsuta HOM05D000089 ORTHO05D005030 3.8e-07 58.5 44 59.1
CAN.G497.9 Capsicum annuum HOM05D000089 ORTHO05D005030 5.0e-07 58.2 97 36.1
Sopen02g034470 Solanum pennellii HOM05D000089 ORTHO05D005030 5.0e-07 58.2 90 35.6
COL.COLO4_04618 Corchorus olitorius HOM05D000085 ORTHO05D005030 6.6e-07 57.8 88 37.5
PGSC0003DMG400010092 Solanum tuberosum HOM05D000089 ORTHO05D005030 6.6e-07 57.8 99 35.4
Haze_14101 Corylus avellana HOM05D000089 ORTHO05D005030 1.1e-06 57.0 97 36.1
Nitab4.5_0012445g0030 Nicotiana tabacum HOM05D000089 ORTHO05D005030 1.1e-06 57.0 88 37.5
AagrBONN_evm.TU.Sc2ySwM_117.3234 Anthoceros agrestis HOM05D000089 ORTHO05D005030 2.5e-06 55.8 45 53.3


User provided reference genes

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