Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 3.1e-47 191.4 95 100.0
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 5.9e-30 134.0 99 73.7
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 9.4e-28 126.7 100 66.0
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 1.2e-27 126.3 103 68.0
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 1.6e-27 125.9 100 66.0
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 6.1e-27 124.0 100 66.0
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 1.8e-26 122.5 100 65.0
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 3.0e-26 121.7 101 65.3
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-25 119.4 100 62.0
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 1.5e-25 119.4 100 62.0
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 4.4e-25 117.9 100 62.0
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 6.1e-19 97.4 123 47.2
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 8.0e-19 97.1 97 56.7
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 1.7e-16 89.4 108 46.3
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 2.2e-16 89.0 112 48.2
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 2.8e-16 88.6 96 52.1
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 2.8e-16 88.6 125 44.8
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 6.3e-16 87.4 94 50.0
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 8.3e-16 87.0 122 41.8
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 8.3e-16 87.0 102 49.0
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.4e-15 85.5 123 41.5
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.4e-15 85.5 117 47.0
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.4e-15 85.5 117 47.0
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 3.1e-15 85.1 100 48.0
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.1e-15 85.1 111 45.0
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 3.1e-15 85.1 118 41.5
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.1e-15 84.7 66 66.7
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.1e-15 84.7 117 47.0
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 4.1e-15 84.7 90 48.9
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 4.1e-15 84.7 107 48.6
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 5.4e-15 84.3 100 52.0
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 7.0e-15 84.0 121 44.6
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 7.0e-15 84.0 50 80.0
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.6e-14 82.8 128 41.4
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.5e-14 81.3 109 45.0
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 5.9e-14 80.9 115 46.1
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 7.7e-14 80.5 74 59.5
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 7.7e-14 80.5 112 42.9
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.0e-13 80.1 116 42.2
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.0e-13 80.1 122 42.6
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 2.9e-13 78.6 60 70.0
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 3.8e-13 78.2 89 48.3
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 3.8e-13 78.2 125 41.6
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 3.8e-13 78.2 112 44.6
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.0e-13 77.8 139 40.3
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 6.5e-13 77.4 113 43.4
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 6.5e-13 77.4 70 55.7
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 8.6e-13 77.0 59 66.1
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.5e-12 76.3 109 42.2
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 1.9e-12 75.9 127 37.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 2.5e-12 75.5 59 64.4
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 3.2e-12 75.1 57 68.4
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 3.2e-12 75.1 120 38.3
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 4.2e-12 74.7 111 42.3
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 5.5e-12 74.3 115 40.0
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 7.2e-12 73.9 61 63.9
TPR.G36054 Trifolium pratense HOM05D003074 ORTHO05D002434 7.2e-12 73.9 71 59.2
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 9.5e-12 73.6 55 65.5
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-11 73.2 121 39.7
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.2e-11 73.2 65 61.5
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.6e-11 72.8 99 45.5
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 2.1e-11 72.4 124 39.5
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.1e-11 72.4 99 43.4
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.1e-11 72.4 99 45.5
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 2.8e-11 72.0 126 37.3
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 2.8e-11 72.0 109 45.0
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 3.6e-11 71.6 109 41.3
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 8.0e-11 70.5 103 39.8
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 8.0e-11 70.5 113 41.6
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 1.0e-10 70.1 56 62.5
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 1.0e-10 70.1 107 45.8
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.0e-10 70.1 102 39.2
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 1.4e-10 69.7 62 61.3
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.4e-10 69.7 85 48.2
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 1.8e-10 69.3 116 41.4
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 2.3e-10 68.9 61 60.7
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 3.0e-10 68.6 82 47.6
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 3.0e-10 68.6 57 66.7
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 3.0e-10 68.6 56 62.5
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.0e-10 68.2 93 44.1
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 5.2e-10 67.8 107 42.1
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 6.8e-10 67.4 121 38.0
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 6.8e-10 67.4 128 35.2
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 6.8e-10 67.4 106 40.6
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 8.8e-10 67.0 113 36.3
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.8e-10 67.0 126 34.9
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.2e-09 66.6 61 55.7
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.2e-09 66.6 60 55.0
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 1.2e-09 66.6 106 38.7
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 1.2e-09 66.6 62 59.7
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 1.5e-09 66.2 56 58.9
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.5e-09 66.2 93 43.0
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.6e-09 65.5 125 38.4
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 2.6e-09 65.5 87 41.4
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 3.4e-09 65.1 86 44.2
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 3.4e-09 65.1 98 35.7
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 4.4e-09 64.7 115 33.9
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 5.7e-09 64.3 65 58.5
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.5e-09 63.9 61 57.4
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 7.5e-09 63.9 78 52.6
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 7.5e-09 63.9 78 52.6
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 7.5e-09 63.9 106 43.4
Lsat_1_v5_gn_4_60581 Lactuca sativa HOM05D003074 ORTHO05D002434 9.8e-09 63.5 64 54.7
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 1.3e-08 63.2 62 54.8
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 1.3e-08 63.2 115 39.1
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.2e-08 62.4 68 54.4
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 2.2e-08 62.4 108 37.0
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.2e-08 62.4 140 33.6
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 2.8e-08 62.0 140 33.6
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 2.8e-08 62.0 111 43.2
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.7e-08 61.6 140 33.6
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.7e-08 61.6 140 33.6
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 3.7e-08 61.6 111 40.5
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.9e-08 61.2 112 37.5
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 4.9e-08 61.2 112 37.5
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 4.9e-08 61.2 57 56.1
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 6.3e-08 60.8 92 44.6
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 6.3e-08 60.8 115 34.8
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 6.3e-08 60.8 57 56.1
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.3e-08 60.8 141 34.8
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 8.3e-08 60.5 67 50.7
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 8.3e-08 60.5 103 40.8
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 8.3e-08 60.5 122 37.7
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 8.3e-08 60.5 122 37.7
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.1e-07 60.1 108 34.3
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.1e-07 60.1 112 34.8
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 1.1e-07 60.1 57 57.9
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 1.4e-07 59.7 105 40.0
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 1.8e-07 59.3 109 36.7
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.4e-07 58.9 115 33.9
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 2.4e-07 58.9 123 35.8
Gorai.010G252600 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.4e-07 58.9 122 32.0
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 4.1e-07 58.2 66 50.0
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.1e-07 58.2 117 37.6
Gohir.D06G213500 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.1e-07 58.2 122 32.0
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 4.1e-07 58.2 119 35.3
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 7.0e-07 57.4 125 36.0
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 7.0e-07 57.4 58 48.3
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 9.2e-07 57.0 68 47.1
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.2e-06 56.6 65 55.4
Solyc12g005000.1 Solanum lycopersicum HOM05D003074 ORTHO05D002434 1.2e-06 56.6 102 41.2
CDE05G0485 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 1.6e-06 56.2 114 32.5
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 1.6e-06 56.2 60 51.7
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.6e-06 56.2 120 35.0
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.0e-06 55.8 77 48.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 2.0e-06 55.8 91 34.1
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.0e-06 55.8 117 35.9
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 2.0e-06 55.8 60 46.7
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 3.5e-06 55.1 111 36.9
AUR62012700 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.5e-06 55.1 75 48.0
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 3.5e-06 55.1 107 36.4
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.5e-06 54.7 68 47.1
Gohir.A06G207800 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.5e-06 54.7 68 41.2
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.9e-06 54.3 58 48.3
CARHR228720 Cardamine hirsuta HOM05D003074 ORTHO05D002434 5.9e-06 54.3 63 42.9
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 7.8e-06 53.9 112 33.9


User provided reference genes

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